RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 TMEM211Q6ICI0 200 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TCEAL6Q6IPX3 200 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 EIF5AL1Q6IS14 154 aaKnown RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 DHRS11Q6UWP2 260 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 C6orf201Q7Z4U5 140 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 LINC00596Q86U02 117 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TMEM200AQ86VY9 491 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 BAP18Q8IXM2 172 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FAM185AQ8N0U4 392 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 LRTM2Q8N967 370 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 CCDC71LQ8N9Z2 235 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 GALNT11Q8NCW6 608 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 SLC30A7Q8NEW0 376 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 OR2AE1Q8NHA4 323 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FNDC9Q8TBE3 224 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ABHD3Q8WU67 409 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TCEAL3Q969E4 200 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 APOBEC3DQ96AK3 386 aaPredicted RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 APH1AQ96BI3 265 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 GALNT14Q96FL9 552 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ZNF845Q96IR2 970 aaPredicted RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 LINC00052Q96N35 136 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ZNF2Q9BSG1 426 aaPredicted RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 RNF126Q9BV68 326 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 SUCNR1Q9BXA5 334 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TTTY12Q9BZ98 90 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 WDR13Q9H1Z4 485 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 SMOC1Q9H4F8 434 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 METTL8Q9H825 291 aaKnown RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 BARX1Q9HBU1 254 aaPredicted RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 GP6Q9HCN6 339 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ACKR4Q9NPB9 350 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TMEM100Q9NV29 134 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FAM86C1Q9NVL1 165 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FOXJ2Q9P0K8 574 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 AK3Q9UIJ7 227 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TUBD1Q9UJT1 453 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 KCNIP3Q9Y2W7 256 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 KIF26BQ2KJY2 2108 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 KNL1Q8NG31 2342 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SEC16AO15027 2179 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 IGKV1-12A0A0C4DH73 117 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 PQLC2LA1A4F0 135 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 POM121CA8CG34 1229 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 H0YIZ8 118 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 KLRC4-KLRK1H3BQV0 150 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SDCBPO00560 298 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 MSTNO14793 375 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SPRY1O43609 319 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 ANGPTL7O43827 346 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 ADAP1O75689 374 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 IGKV1D-12P01611 117 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 GLAP06280 429 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 HOXD4P09016 255 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 ZNF728P0DKX0 622 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 FUT3P21217 361 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 GLRA1P23415 457 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 ITGA3P26006 1051 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 CD82P27701 267 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 GLP1RP43220 463 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SRPXP78539 464 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 PLGLB1Q02325 96 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 RBM39Q14498 530 aaKnown RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 SMCO1Q147U7 214 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 ATXN7L3Q14CW9 347 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 TAF9Q16594 264 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 LPAL2Q16609 132 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 MPV17LQ2QL34 196 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 CCDC157Q569K6 752 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SPINK14Q6IE38 97 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 MRPL21Q7Z2W9 205 aaKnown RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 SLC38A6Q8IZM9 456 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 TMEM251Q8N6I4 163 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 MDS2Q8NDY4 140 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 FGFBP3Q8TAT2 258 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 RNF141Q8WVD5 230 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 NANOS1Q8WY41 292 aaKnown RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 PIGCQ92535 297 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 ZNF775Q96BV0 537 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 MOB3AQ96BX8 217 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SAT2Q96F10 170 aaPredicted RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 ZNF75AQ96N20 296 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 CNTNAP3BQ96NU0 1288 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SIGLEC12Q96PQ1 595 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SYT3Q9BQG1 590 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SULT4A1Q9BR01 284 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 FAAP24Q9BTP7 215 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 REPIN1Q9BWE0 567 aaKnown RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 CNTNAP3Q9BZ76 1288 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SLC5A7Q9GZV3 580 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 PLK3Q9H4B4 646 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 NAA60Q9H7X0 242 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 RHOFQ9HBH0 211 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 C12orf4Q9NQ89 552 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 CYTL1Q9NRR1 136 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 PLSCR2Q9NRY7 297 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 SLC7A10Q9NS82 523 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 RCC2Q9P258 522 aaKnown RBP5.41□□□□□ -1.54
CLN3-223ENST00000566472 GPR160Q9UJ42 338 aa5.41□□□□□ -1.54
CLN3-223ENST00000566472 STARD10Q9Y365 291 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms