RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CHST5Q9GZS9 411 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 FRRS1LQ9P0K9 344 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-213ENST00000565047 EXOGQ9Y2C4 368 aaKnown RBP12.14□□□□□ -0.47
CLN3-213ENST00000565047 POLDIP2Q9Y2S7 368 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 IGKV1-9A0A0C4DH69 117 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 A0A1B0GUS0 222 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 MEGF11A6BM72 1044 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 H3BSH0 61 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 SYT7O43581 403 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ZNF737O75373 536 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 KNG1P01042 644 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 TK1P04183 234 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ISG15P05161 165 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 DLX6P56179 175 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ERVFRD-1P60508 538 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ACSM1Q08AH1 577 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ZIK1Q3SY52 487 aaPredicted RBP12.13□□□□□ -0.47
CLN3-213ENST00000565047 TP53I3Q53FA7 332 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 BATF2Q8N1L9 274 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 CBR4Q8N4T8 237 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 ZSCAN4Q8NAM6 433 aaPredicted RBP12.13□□□□□ -0.47
CLN3-213ENST00000565047 OR2G2Q8NGZ5 317 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 OR4F5Q8NH21 305 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 LINC01006Q8NI28 216 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 C10orf35Q96D05 121 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 SLC29A1Q99808 456 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 CITED1Q99966 193 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 SEBOXQ9HB31 216 aaPredicted RBP12.13□□□□□ -0.47
CLN3-213ENST00000565047 BEX1Q9HBH7 125 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 AASSQ9UDR5 926 aa12.13□□□□□ -0.47
CLN3-213ENST00000565047 A0A1W2PQ09 198 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 A0A1W2PRD5 423 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 A0A1W2PRF3 423 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 A0A1W2PRM7 423 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 CLPSL1A2RUU4 121 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 K7N7A8 449 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 FBP1P09467 338 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 FUT6P51993 359 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 OR12D2P58182 307 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 MEDAGQ5VYS4 303 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 OLFML2AQ68BL7 652 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 NCR3LG1Q68D85 454 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 CRIP3Q6Q6R5 217 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 KCTD20Q7Z5Y7 419 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 MKXQ8IYA7 352 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 TRMT10AQ8TBZ6 339 aaKnown RBP12.12□□□□□ -0.47
CLN3-213ENST00000565047 RNFT2Q96EX2 444 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 ADAT3Q96EY9 351 aaPredicted RBP12.12□□□□□ -0.47
CLN3-213ENST00000565047 FAM234AQ9H0X4 552 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 GNG8Q9UK08 70 aa12.12□□□□□ -0.47
CLN3-213ENST00000565047 LOC107986453A0A1B0GWG9 222 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 FAM230AA0A1W2PPH8 454 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 SLC16A6O15403 523 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 NXPH2O95156 264 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 UBCP0CG48 685 aaKnown RBP12.11□□□□□ -0.47
CLN3-213ENST00000565047 ATP6V1E1P36543 226 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 PROK1P58294 105 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 RPL31P62899 125 aaKnown RBP12.11□□□□□ -0.47
CLN3-213ENST00000565047 ZNF273Q14593 569 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 MIDNQ504T8 468 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 Q6ZSV7 163 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 ENTHD1Q8IYW4 607 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 BEND2Q8NDZ0 799 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 DNAAF1Q8NEP3 725 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 OR5D13Q8NGL4 314 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 RHOXF1Q8NHV9 184 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 LGALS12Q96DT0 336 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 PELI1Q96FA3 418 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 MEGF9Q9H1U4 602 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 DPAGT1Q9H3H5 408 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 C16orf95Q9H693 158 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 IMPAD1Q9NX62 359 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 CAB39Q9Y376 341 aaPredicted RBP12.11□□□□□ -0.47
CLN3-213ENST00000565047 FAM96BQ9Y3D0 163 aa12.11□□□□□ -0.47
CLN3-213ENST00000565047 TMEM82A0PJX8 343 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 MEIOCA2RUB1 952 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 OR4C45A6NMZ5 311 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 C17orf98A8MV24 154 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 SLC1A7O00341 560 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 TSPAN9O75954 239 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 CLPXO76031 633 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 CRYBA1P05813 215 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 CCL3L1P16619 93 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 EEF1B2P24534 225 aaKnown RBP12.1□□□□□ -0.47
CLN3-213ENST00000565047 CCR9P51686 369 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 ACTC1P68032 377 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 ACTA1P68133 377 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 COL10A1Q03692 680 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 GDPGP1Q6ZNW5 385 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 C17orf107Q6ZR85 190 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 CCDC121Q6ZUS5 278 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 UTS2BQ765I0 119 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 TCF23Q7RTU1 214 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 RNF144BQ7Z419 303 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 FAM185AQ8N0U4 392 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 OR4M1Q8NGD0 313 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 OR51A4Q8NGJ6 313 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 OR10AC1Q8NH08 325 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 PIFOQ8TCI5 191 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms