RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SMURF1Q9HCE7 757 aa8.17□□□□□ -1.1
CLK3-208ENST00000562626 METRNQ9UJH8 293 aa8.17□□□□□ -1.1
CLK3-208ENST00000562626 SLC7A11Q9UPY5 501 aa8.17□□□□□ -1.1
CLK3-208ENST00000562626 NSD1Q96L73 2696 aaPredicted RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 IGKV1D-17A0A075B6S4 117 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 LRRC30A6NM36 301 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 KIAA1324LA8MWY0 1029 aaPredicted RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 ALX3O95076 343 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 SERPINA3P01011 423 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 FN1P02751 2386 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 MAS1P04201 325 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 CD2P06729 351 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 UCHL1P09936 223 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 IRF2P14316 349 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 RAB3AP20336 220 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 ZFP36P26651 326 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 MDH2P40926 338 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 OR3A4PP47883 348 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 RBP2P50120 134 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 ATP1B3P54709 279 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 IL24Q13007 206 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 PDZK1IP1Q13113 114 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 KISS1Q15726 138 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 TMEM155Q4W5P6 130 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 DDI2Q5TDH0 399 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 STUMQ69YW2 141 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 ZNF841Q6ZN19 808 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 ACP7Q6ZNF0 438 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 ZNF573Q86YE8 665 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 FAM216BQ8N7L0 139 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 OR5D14Q8NGL3 314 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 HPS1Q92902 700 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 SPSB1Q96BD6 273 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 MSI2Q96DH6 328 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 TIMD4Q96H15 378 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 C1orf159Q96HA4 380 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 TECTBQ96PL2 329 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 CCL13Q99616 98 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 GAL3ST1Q99999 423 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 NRIP2Q9BQI9 281 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 OR51E2Q9H255 320 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 RNF167Q9H6Y7 350 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 PATZ1Q9HBE1 687 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 LPAR2Q9HBW0 351 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 HES4Q9HCC6 221 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 RBFOX1Q9NWB1 397 aaKnown RBP8.16□□□□□ -1.1
CLK3-208ENST00000562626 ZNF222Q9UK12 451 aa8.16□□□□□ -1.1
CLK3-208ENST00000562626 A0A087WXM4 84 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 A0A1W2PP11 408 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 IFNL4K9M1U5 179 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 CCRL2O00421 344 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 PHF1O43189 567 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 NOS1APO75052 506 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 RGS9O75916 674 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 CDRT1O95170 752 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 SFTPBP07988 381 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 WNT2P09544 360 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 PSG2P11465 335 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 PRKACBP22694 351 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 GLRA1P23415 457 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 BDKRB2P30411 391 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 GABRA5P31644 462 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 TGFBR1P36897 503 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 CD200R1LQ6Q8B3 271 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 METAP1DQ6UB28 335 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 LHFPL2Q6ZUX7 228 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 PEG10Q86TG7 708 aaKnown RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 SATL1Q86VE3 508 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 C1orf87Q8N0U7 546 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 MS4A15Q8N5U1 240 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 CD177Q8N6Q3 437 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 OR10K1Q8NGX5 313 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 ANGPTL6Q8NI99 470 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 FCGR1BQ92637 280 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 TMIGD2Q96BF3 282 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 C1orf147Q96MC9 270 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 GAFA1Q96PS6 74 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 NR1H4Q96RI1 486 aaPredicted RBP8.15□□□□□ -1.1
CLK3-208ENST00000562626 KCNK15Q9H427 330 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 ZNF581Q9P0T4 197 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 NLKQ9UBE8 527 aa8.15□□□□□ -1.1
CLK3-208ENST00000562626 TRDV1A0A1B0GX56 115 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 OR2AT4A6NND4 320 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 TRAPPC2LH3BP13 241 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 ADAM20O43506 726 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 KDM4BO94953 1096 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 FSTL3O95633 263 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 ALDOBP05062 364 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 RPS2P15880 293 aaKnown RBP8.14□□□□□ -1.11
CLK3-208ENST00000562626 JUNBP17275 347 aaPredicted RBP8.14□□□□□ -1.11
CLK3-208ENST00000562626 GADD45AP24522 165 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 DUSP1P28562 367 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 SNU13P55769 128 aaKnown RBP8.14□□□□□ -1.11
CLK3-208ENST00000562626 LCN2P80188 198 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 DGUOKQ16854 277 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 ZNF788Q6ZQV5 615 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 DCDC5Q6ZRR9 648 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 NR2C2APQ86WQ0 139 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 MUC20Q8N307 709 aaPredicted RBP8.14□□□□□ -1.11
CLK3-208ENST00000562626 OR4D6Q8NGJ1 314 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms