RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 LDLRAD2Q5SZI1 272 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CCBE1Q6UXH8 406 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ASRGL1Q7L266 308 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 OR14K1Q8NGZ2 314 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CNN2Q99439 309 aaKnown RBP13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 NKX3-1Q99801 234 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 APOL4Q9BPW4 351 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MOB1AQ9H8S9 216 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 PAPOLBQ9NRJ5 636 aaKnown RBP13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SERTAD4Q9NUC0 356 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 DNAJB9Q9UBS3 223 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 GTF2A1LQ9UNN4 478 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 POLDIP2Q9Y2S7 368 aa13.5□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 PLXNB1O43157 2135 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 hCG_1809904A0A1W2PP81 198 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 A0A1W2PPE2 198 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 A0A1W2PR64 198 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 A0A1W2PRV1 198 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MEX3AA1L020 520 aaKnown RBP13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 C17orf98A8MV24 154 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 HOXB6P17509 224 aaKnown RBP13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ERVK11-1P61568 191 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ESRRGP62508 458 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FBLN7Q53RD9 439 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 BCL2L15Q5TBC7 163 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ZNF322Q6U7Q0 402 aaPredicted RBP13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 Q6ZPA2 131 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 Q6ZSR3 168 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SPATA24Q86W54 205 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ANGPTL5Q86XS5 388 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ELMOD2Q8IZ81 293 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CCDC197Q8NCU1 140 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ADGRL4Q9HBW9 690 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 OR52A1Q9UKL2 312 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TCF19Q9Y242 345 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 R4GMQ9 66 aa13.49□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TCRBV3S1A0A5B6 114 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ODF3BA8MYP8 253 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 K7N7A8 449 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FAM107AO95990 144 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ARG1P05089 322 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CD28P10747 220 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 DAPP51397 102 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 COL10A1Q03692 680 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FAM189A2Q15884 450 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FAHD1Q6P587 224 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MEPCEQ7L2J0 689 aaKnown RBP13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TMEM219Q86XT9 240 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SLC35F2Q8IXU6 374 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 Q8N2B8 174 aa13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 WIPF2Q8TF74 440 aaPredicted RBP13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MRM2Q9UI43 246 aaKnown RBP13.48□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 A6NDX4 124 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 F8VVB4 439 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 F8VWA3 439 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ZNF737O75373 536 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FBXO24O75426 580 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 EFNB1P98172 346 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 IL24Q13007 206 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FLOT2Q14254 428 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 NSUN5P1Q3KNT7 163 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 AADACL4Q5VUY2 407 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TCF23Q7RTU1 214 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ASCC1Q8N9N2 400 aaKnown RBP13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TRMT10AQ8TBZ6 339 aaKnown RBP13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 DNAJC9Q8WXX5 260 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 PKIBQ9C010 78 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SLC22A13Q9Y226 551 aa13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 TBL2Q9Y4P3 447 aaKnown RBP13.47□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 DHRS7CA6NNS2 312 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ADARB2-AS1A8MUL3 147 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ZNF728P0DKX0 622 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 JUNBP17275 347 aaPredicted RBP13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CCL1P22362 96 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 EPHA2P29317 976 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SSX2Q16385 188 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 OXLD1Q5BKU9 147 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 NXNL2Q5VZ03 156 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 ZNF626Q68DY1 528 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SSX6Q7RTT6 188 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 DTX3Q8N9I9 347 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 OR11H6Q8NGC7 330 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 OR13D1Q8NGV5 346 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 FOXRED1Q96CU9 486 aaPredicted RBP13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MALSU1Q96EH3 234 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 NRBF2Q96F24 287 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MNTQ99583 582 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CDCA4Q9BXL8 241 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MMP28Q9H239 520 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 CLN6Q9NWW5 311 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 MTCH1Q9NZJ7 389 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 SNX5Q9Y5X3 404 aa13.46□□□□□ -0.25
VPS9D1-AS1-201ENST00000562298 IGKV1-27A0A075B6S5 117 aa13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 FAM230AA0A1W2PPH8 454 aa13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 MITFO75030 526 aaPredicted RBP13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 RBP4P02753 201 aa13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 IGHV1-8P0DP01 117 aa13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 EDDM3BP56851 147 aa13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 CNN3Q15417 329 aaKnown RBP13.45□□□□□ -0.26
VPS9D1-AS1-201ENST00000562298 ODF4Q2M2E3 257 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms