RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RFPL4AL1F8VTS6 287 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 RGS11O94810 467 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 FUT3P21217 361 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CD34P28906 385 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MMP16P51512 607 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 BAMBIQ13145 260 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 GK2Q14410 553 aaPredicted RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 FXNQ16595 210 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SNAI3Q3KNW1 292 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 OR56B4Q8NH76 319 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 KLF14Q8TD94 323 aaPredicted RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 MYOZ1Q9NP98 299 aaPredicted RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 PTPRSQ13332 1948 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MYLKQ15746 1914 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 KIR2DS1A0A191URI9 304 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TMEM229AB2RXF0 380 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 FAM157AC9JC47 383 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 PROB1E7EW31 1015 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SLC17A2O00624 439 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 ADAM10O14672 748 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TTRP02766 147 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 PDGFAP04085 211 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 IL7P13232 177 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CPN1P15169 458 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CD40LGP29965 261 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 KIR2DS4P43632 304 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TAS2R46P59540 309 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 GUCA2AQ02747 115 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CATR1Q13166 79 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 KIR2DS1Q14954 304 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SGK3Q96BR1 496 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TRAV8-7A0A075B6U6 113 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 PLPP2O43688 288 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 HLA-AP01891 365 aaKnown RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 CSF3P09919 207 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 F2RL1P55085 397 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 GNB1P62873 340 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 BDH1Q02338 343 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MOB3BQ86TA1 216 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 OR4S1Q8NGB4 309 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SLC25A46Q96AG3 418 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 ARHGAP5-AS1Q96IT6 56 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SEC22AQ96IW7 307 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 HAO2Q9NYQ3 351 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 RNF7Q9UBF6 113 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 PRELID3BQ9Y3B1 194 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TRAV38-1A0A0B4J264 116 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 TERTO14746 1132 aaKnown RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 CRHP06850 196 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNF728P0DKX0 622 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 OMGP23515 440 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CD80P33681 288 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ALDH3B2P48448 385 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CCR6P51684 374 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CCR9P51686 369 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNF133P52736 654 aaPredicted RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 TAS2R20P59543 309 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 DGCR2P98153 550 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 NAAAQ02083 359 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 SSX1Q16384 188 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 TIMM23BQ5SRD1 257 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 OR8H1Q8NGG4 311 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNRF4Q8WWF5 429 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 SNAPC3Q92966 411 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 PURGQ9UJV8 347 aaKnown RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 PLXND1Q9Y4D7 1925 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 TP53BP1Q12888 1972 aaPredicted RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 OR5B21A6NL26 309 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 BOLA2-SMG1P6H3BVE0 249 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 PHF1O43189 567 aaPredicted RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 LMX1BO60663 402 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CLDN14O95500 239 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 SEMG1P04279 462 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 GLAP06280 429 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 FCGR2CP31995 323 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 PHYHD1Q5SRE7 291 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 FNDC7Q5VTL7 733 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CCL13Q99616 98 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 WNT5BQ9H1J7 359 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 KLK11Q9UBX7 282 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 EXOGQ9Y2C4 368 aaKnown RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 A0A1B0GV50 99 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 TM4SF5O14894 197 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CLPSP04118 112 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 CD40P25942 277 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 KRBOX4Q5JUW0 171 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 RTL6Q6ICC9 239 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 OR52W1Q6IF63 320 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 SIAH3Q8IW03 269 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 LYG1Q8N1E2 194 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNF709Q8N972 641 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 OR51S1Q8NGJ8 323 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNF519Q8TB69 540 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 BCL7BQ9BQE9 202 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 ZNF224Q9NZL3 707 aa8.02□□□□□ -1.13
VPS39-205ENST00000562258 SIRT4Q9Y6E7 314 aaPredicted RBP8.02□□□□□ -1.13
VPS39-205ENST00000562258 NCBP2LA6PVI3 153 aaKnown RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 H7C1Q1 480 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 ATP6V1G1O75348 118 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 IL3RAP26951 378 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms