RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 IL24Q13007 206 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 KLRD1Q13241 179 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 FDX2Q6P4F2 183 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 C16orf87Q6PH81 154 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 ZNF555Q8NEP9 628 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 SLAMF9Q96A28 289 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 FGGYQ96C11 551 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 ADAT3Q96EY9 351 aaPredicted RBP12.87□□□□□ -0.35
VPS39-203ENST00000561797 PELI1Q96FA3 418 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 BORCS8Q96FH0 119 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 MRPL48Q96GC5 212 aaKnown RBP12.87□□□□□ -0.35
VPS39-203ENST00000561797 ALG8Q9BVK2 526 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 PKIBQ9C010 78 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 CHST5Q9GZS9 411 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 NOX4Q9NPH5 578 aa12.87□□□□□ -0.35
VPS39-203ENST00000561797 RNASEK-C17orf49H0YIS7 233 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 SLC1A7O00341 560 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 FADS2O95864 444 aaKnown RBP12.86□□□□□ -0.35
VPS39-203ENST00000561797 MELTFP08582 738 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 ZNF20P17024 532 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 ACTA2P62736 377 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 ACTG2P63267 376 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 GALEQ14376 348 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 CNN3Q15417 329 aaKnown RBP12.86□□□□□ -0.35
VPS39-203ENST00000561797 ZSCAN26Q16670 478 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 LRRC36Q1X8D7 754 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 PIP4P2Q8N4L2 257 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 ZNF561Q8N587 486 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 OR10AC1Q8NH08 325 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 PP6455Q8WZ26 134 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 ISG20L2Q9H9L3 353 aaKnown RBP12.86□□□□□ -0.35
VPS39-203ENST00000561797 HES4Q9HCC6 221 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 C19orf12Q9NSK7 152 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 SMPD3Q9NY59 655 aaPredicted RBP12.86□□□□□ -0.35
VPS39-203ENST00000561797 MTCH1Q9NZJ7 389 aa12.86□□□□□ -0.35
VPS39-203ENST00000561797 F8VVB4 439 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 F8VWA3 439 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ISG15P05161 165 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 CCR9P51686 369 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ATP1B3P54709 279 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ERVK11-1P61568 191 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ALKBH1Q13686 389 aaKnown RBP12.85□□□□□ -0.35
VPS39-203ENST00000561797 BLMHQ13867 455 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 LPCAT4Q643R3 524 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 METAP1DQ6UB28 335 aaPredicted RBP12.85□□□□□ -0.35
VPS39-203ENST00000561797 SLC25A26Q70HW3 274 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 PNKDQ8N490 385 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ZNF676Q8N7Q3 588 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 OR4M1Q8NGD0 313 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 OR52I1Q8NGK6 324 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 OR13C3Q8NGS6 347 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 APH1BQ8WW43 257 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 C10orf35Q96D05 121 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 CEP19Q96LK0 163 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 ERVK13-1Q9NX77 482 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 HHLA2Q9UM44 414 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 FAM96BQ9Y3D0 163 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 RPL36Q9Y3U8 105 aaKnown RBP12.85□□□□□ -0.35
VPS39-203ENST00000561797 TENM1Q9UKZ4 2725 aa12.85□□□□□ -0.35
VPS39-203ENST00000561797 TRBV23-1A0A0A0MS06 115 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 IGKV1-9A0A0C4DH69 117 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 FAM181BA6NEQ2 426 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 OR4C45A6NMZ5 311 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 H0YAE9 185 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 M0R1W7 72 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 KNG1P01042 644 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 IGHA1P01876 353 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 ATF1P18846 271 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 OMGP23515 440 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 EEF1B2P24534 225 aaKnown RBP12.84□□□□□ -0.35
VPS39-203ENST00000561797 POU3F4P49335 361 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 RBP2P50120 134 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 GUCA2AQ02747 115 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 RAB40BQ12829 278 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 SMN1Q16637 294 aaKnown RBP12.84□□□□□ -0.35
VPS39-203ENST00000561797 FIP1L1Q6UN15 594 aaKnown RBP12.84□□□□□ -0.35
VPS39-203ENST00000561797 C1orf122Q6ZSJ8 110 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 EGFL6Q8IUX8 553 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 OR51A4Q8NGJ6 313 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 TNFRSF14Q92956 283 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 MYCBPQ99417 103 aaPredicted RBP12.84□□□□□ -0.35
VPS39-203ENST00000561797 CHIAQ9BZP6 476 aa12.84□□□□□ -0.35
VPS39-203ENST00000561797 E9PI62 339 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 NPFFO15130 113 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 WBP4O75554 376 aaKnown RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 CLIC3O95833 236 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 IGHV4-59P01825 116 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 TK1P04183 234 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 CRYBA1P05813 215 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 OCM2P0CE71 109 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 OCMP0CE72 109 aaPredicted RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 PRKACBP22694 351 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 AZGP1P25311 298 aaKnown RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 MTCP1P56278 107 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 RPL31P62899 125 aaKnown RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 COL10A1Q03692 680 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 KLHL22Q53GT1 634 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 SYS1Q8N2H4 156 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 ASCC1Q8N9N2 400 aaKnown RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 DNAAF1Q8NEP3 725 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms