RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 F8P00451 2351 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 A0A1B0GW55 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 TRDV1A0A1B0GX56 115 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 FAM157AC9JC47 383 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L2P0CJ85 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L3P0CJ86 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L4P0CJ87 422 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L5P0CJ88 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L6P0CJ89 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L7P0CJ90 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 OR3A4PP47883 348 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 SEC61A1P61619 476 aaKnown RBP18.19■□□□□ 0.5
SNX1-210ENST00000560260 STUMQ69YW2 141 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4L9Q6RFH8 374 aaPredicted RBP18.19■□□□□ 0.5
SNX1-210ENST00000560260 ACP7Q6ZNF0 438 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 C1QL2Q7Z5L3 287 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 SATL1Q86VE3 508 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 MUC20Q8N307 709 aaPredicted RBP18.19■□□□□ 0.5
SNX1-210ENST00000560260 SPICQ8N5J4 248 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 OR5T2Q8NGG2 359 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 CEP19Q96LK0 163 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 SMR3AQ99954 134 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 PATZ1Q9HBE1 687 aaKnown RBP18.19■□□□□ 0.5
SNX1-210ENST00000560260 CTSZQ9UBR2 303 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 DUX4Q9UBX2 424 aa18.19■□□□□ 0.5
SNX1-210ENST00000560260 MED13LQ71F56 2210 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 TRAV38-1A0A0B4J264 116 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 SHISA3A0PJX4 238 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 FCN3O75636 299 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 ACAA1P09110 424 aaPredicted RBP18.18■□□□□ 0.5
SNX1-210ENST00000560260 INHBBP09529 407 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 IGHV4-31P0DP07 118 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 BCL3P20749 454 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 DCDC5Q6ZRR9 648 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 PHYHIPQ92561 330 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 C1orf159Q96HA4 380 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 GFI1Q99684 422 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 OR51E2Q9H255 320 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 VCX3AQ9NNX9 186 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 RBFOX1Q9NWB1 397 aaKnown RBP18.18■□□□□ 0.5
SNX1-210ENST00000560260 NLKQ9UBE8 527 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 IL36RNQ9UBH0 155 aa18.18■□□□□ 0.5
SNX1-210ENST00000560260 MAGEB3O15480 346 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 MUC1P15941 1255 aaPredicted RBP18.17■□□□□ 0.5
SNX1-210ENST00000560260 CD36P16671 472 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 GADD45AP24522 165 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 CALRP27797 417 aaKnown RBP18.17■□□□□ 0.5
SNX1-210ENST00000560260 ZNF93P35789 620 aaPredicted RBP18.17■□□□□ 0.5
SNX1-210ENST00000560260 MICBQ29980 383 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 MKXQ8IYA7 352 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 OR51F2Q8NH61 342 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 TNFAIP8L1Q8WVP5 186 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 TMIGD2Q96BF3 282 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 YIPF6Q96EC8 236 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 GPER1Q99527 375 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 TCF7L1Q9HCS4 588 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 DNAJB11Q9UBS4 358 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 ZNF222Q9UK12 451 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 STUB1Q9UNE7 303 aa18.17■□□□□ 0.5
SNX1-210ENST00000560260 IGKV1D-17A0A075B6S4 117 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 KDM4BO94953 1096 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 NXPH2O95156 264 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 SFTPBP07988 381 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 WNT2P09544 360 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 TMEM225BP0DP42 221 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 CALCBP10092 127 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 PSG2P11465 335 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 SRMP19623 302 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 C22orf42Q6IC83 251 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 SAXO1Q8IYX7 474 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 ANGPTL6Q8NI99 470 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 C12orf43Q96C57 262 aaKnown RBP18.16■□□□□ 0.5
SNX1-210ENST00000560260 CCL13Q99616 98 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 MRPS26Q9BYN8 205 aaKnown RBP18.16■□□□□ 0.5
SNX1-210ENST00000560260 SMURF1Q9HCE7 757 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 RASL12Q9NYN1 266 aa18.16■□□□□ 0.5
SNX1-210ENST00000560260 ARL6IP5O75915 188 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 SELLP14151 372 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 RPS2P15880 293 aaKnown RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 ZNF16P17020 682 aaPredicted RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 GALP22466 123 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 CEBPDP49716 269 aaPredicted RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 SMIM21Q3B7S5 101 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 ASCL4Q6XD76 172 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 JAGN1Q8N5M9 183 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 FAM216BQ8N7L0 139 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 NKAIN3Q8N8D7 197 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 ZSCAN4Q8NAM6 433 aaPredicted RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 EMG1Q92979 244 aaKnown RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 RAB39BQ96DA2 213 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 MSI2Q96DH6 328 aaKnown RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 FAM192AQ9GZU8 254 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 CNTD2Q9H8S5 307 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 EXOSC4Q9NPD3 245 aaKnown RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 TXNL4BQ9NX01 149 aaKnown RBP18.15■□□□□ 0.5
SNX1-210ENST00000560260 METRNQ9UJH8 293 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 PCDHB10Q9UN67 800 aa18.15■□□□□ 0.5
SNX1-210ENST00000560260 OR2AT4A6NND4 320 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 TRAPPC2LH3BP13 241 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 ADAM20O43506 726 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms