RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 RPUSD3Q6P087 351 aaKnown RBP9.19□□□□□ -0.94
CUX1-217ENST00000558836 CLEC18BQ6UXF7 455 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 SLC25A26Q70HW3 274 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 MCEMP1Q8IX19 187 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 ZSCAN4Q8NAM6 433 aaPredicted RBP9.19□□□□□ -0.94
CUX1-217ENST00000558836 OR56B2PQ8NGI1 322 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 HS3ST6Q96QI5 342 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 PPA2Q9H2U2 334 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 LIME1Q9H400 295 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 COMMD9Q9P000 198 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 ST3GAL6Q9Y274 331 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 IGKV3D-15A0A087WSY6 115 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 F8VVB4 439 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 F8VWA3 439 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 KLRC4-KLRK1H3BQV0 150 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 IL2RAP01589 272 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 P2RX3P56373 397 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SUPT4H1P63272 117 aaKnown RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 CNN3Q15417 329 aaKnown RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 TOR2AQ5JU69 321 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 VAX1Q5SQQ9 334 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SUMF1Q8NBK3 374 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 MDS2Q8NDY4 140 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 OR10AD1Q8NGE0 317 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 OR5AP2Q8NGF4 316 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SPSB1Q96BD6 273 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ZNF2Q9BSG1 426 aaPredicted RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 TM2D1Q9BX74 207 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 MYOZ1Q9NP98 299 aaPredicted RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 SPRR3Q9UBC9 169 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 IGHV3-64DA0A0J9YX35 117 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 HSPB6O14558 160 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 WT1P19544 449 aaPredicted RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 DUSP1P28562 367 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ANKRD55Q3KP44 614 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 KRTAP27-1Q3LI81 207 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 TMEM128Q5BJH2 165 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 Q6ZSR3 168 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 OVCH2Q7RTZ1 564 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 GCNT2Q8N0V5 402 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 TNRC6AQ8NDV7 1962 aaKnown RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 EMG1Q92979 244 aaKnown RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 TMEM45BQ96B21 275 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 PARPBPQ9NWS1 579 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 STARD10Q9Y365 291 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 LINC00862A6NCI5 91 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SERPINE3A8MV23 424 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 LILRA1O75019 489 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 DUS4LO95620 317 aaKnown RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 FTH1P19P0C7X4 201 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 CD46P15529 392 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 TBPP20226 339 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 MPZP25189 248 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 GPM6AP51674 278 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 PDZK1IP1Q13113 114 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ZNF766Q5HY98 468 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 CLLU1Q5K131 121 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SPATA46Q5T0L3 261 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ZNF660Q6AZW8 331 aaPredicted RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 C11orf87Q6NUJ2 197 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 FOXRED2Q8IWF2 684 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ARRDC1Q8N5I2 433 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ZNF611Q8N823 705 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 C10orf35Q96D05 121 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 ZNF75AQ96N20 296 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 COQ3Q9NZJ6 369 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 IL36RNQ9UBH0 155 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 SLC7A11Q9UPY5 501 aa9.18□□□□□ -0.94
CUX1-217ENST00000558836 KLF13Q9Y2Y9 288 aaPredicted RBP9.18□□□□□ -0.94
CUX1-217ENST00000558836 ICE1Q9Y2F5 2266 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ARHGAP21Q5T5U3 1957 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 OR7C1O76099 320 aaPredicted RBP9.17□□□□□ -0.94
CUX1-217ENST00000558836 HOXB5P09067 269 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 PRKACBP22694 351 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 IL32P24001 234 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 FXYD4P59646 89 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 TMEM42Q69YG0 159 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 TMEM17Q86X19 198 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 TOMM40LQ969M1 308 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 MARS2Q96GW9 593 aaKnown RBP9.17□□□□□ -0.94
CUX1-217ENST00000558836 VRK1Q99986 396 aaPredicted RBP9.17□□□□□ -0.94
CUX1-217ENST00000558836 CMSS1Q9BQ75 279 aaKnown RBP9.17□□□□□ -0.94
CUX1-217ENST00000558836 C1QTNF5Q9BXJ0 243 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ZNF552Q9H707 407 aaPredicted RBP9.17□□□□□ -0.94
CUX1-217ENST00000558836 GSKIPQ9P0R6 139 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 MBD2Q9UBB5 411 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ANAPC10Q9UM13 185 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ZNF816-ZNF321PA0A0X1KG74 233 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ZSCAN5BA6NJL1 495 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 LINC01387J3KSC0 135 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 CD8AP01732 235 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 C4BPBP20851 252 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 MPGP29372 298 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 HAAOP46952 286 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 ZMYND11Q15326 602 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 UNQ6126/PRO20091Q6UXV3 157 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 OSR2Q8N2R0 312 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 FDCSPQ8NFU4 85 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 SLAMF9Q96A28 289 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 FGF23Q9GZV9 251 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms