RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 LSM2Q9Y333 95 aaKnown RBP11.32□□□□□ -0.6
SHMT2-228ENST00000557302 JMJD1CQ15652 2540 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 TRBV5-5A0A0J9YX44 114 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 OR2AT4A6NND4 320 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 J3QLI3 93 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 SULT1B1O43704 296 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 ALX3O95076 343 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 CYB5AP00167 134 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 CD1AP06126 327 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 HCKP08631 526 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 ACAA1P09110 424 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-228ENST00000557302 HOXB4P17483 251 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-228ENST00000557302 RAB3AP20336 220 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 POU3F4P49335 361 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 MED22Q15528 200 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 Q499Y3 187 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 ATPAF1Q5TC12 328 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-228ENST00000557302 ACP7Q6ZNF0 438 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 SLC25A26Q70HW3 274 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 OR13C5Q8NGS8 318 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 ANGPTL6Q8NI99 470 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 OR5M11Q96RB7 305 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 WNK2Q9Y3S1 2297 aa11.31□□□□□ -0.6
SHMT2-228ENST00000557302 LOC105371242A0A075B767 164 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 A0A1B0GW55 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 TRAPPC2LH3BP13 241 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DVL1O14640 695 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L2P0CJ85 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L3P0CJ86 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L4P0CJ87 422 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L5P0CJ88 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L6P0CJ89 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L7P0CJ90 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 PSG2P11465 335 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 GABARAPL2P60520 117 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 RPS11P62280 158 aaKnown RBP eCLIP11.3□□□□□ -0.6
SHMT2-228ENST00000557302 PPP3R1P63098 170 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 CD276Q5ZPR3 534 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4L9Q6RFH8 374 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-228ENST00000557302 BTNL3Q6UXE8 466 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF788Q6ZQV5 615 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 IL17RELQ6ZVW7 336 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 MKXQ8IYA7 352 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 BATF2Q8N1L9 274 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 FAM216BQ8N7L0 139 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 RAB40AQ8WXH6 277 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 SLAMF9Q96A28 289 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 RFT1Q96AA3 541 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 CPNE2Q96FN4 548 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-228ENST00000557302 MED30Q96HR3 178 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 CEP19Q96LK0 163 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 SPACA5Q96QH8 159 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 C7orf69Q9H7B7 122 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 HES4Q9HCC6 221 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 SMURF1Q9HCE7 757 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 MMP26Q9NRE1 261 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 TAS2R4Q9NYW5 299 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 MTCH1Q9NZJ7 389 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 DUX4Q9UBX2 424 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 INSIG2Q9Y5U4 225 aa11.3□□□□□ -0.6
SHMT2-228ENST00000557302 IGKV1D-17A0A075B6S4 117 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 IGHV2-70DA0A0C4DH43 119 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 MAGEB3O15480 346 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 SPRY1O43609 319 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-228ENST00000557302 NDUFB3O43676 98 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 INMTO95050 263 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 SRD5A1P18405 259 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 AMY2BP19961 511 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 SRP14P37108 136 aaKnown RBP11.29□□□□□ -0.6
SHMT2-228ENST00000557302 GABRA2P47869 451 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 ERVK11-1P61568 191 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 IL13RA1P78552 427 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 PAX2Q02962 417 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 PDZK1IP1Q13113 114 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 IKZF1Q13422 519 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 LRRC10Q5BKY1 277 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF529Q6P280 563 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 Q8IYB0 196 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 TEX29Q8N6K0 151 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 OR51A2Q8NGJ7 313 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 ST8SIA4Q92187 359 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 THRSPQ92748 146 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 UFD1Q92890 307 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 GAFA1Q96PS6 74 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 OR14A2Q96R54 314 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 TMPRSS13Q9BYE2 586 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 CKLFQ9UBR5 152 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF222Q9UK12 451 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 ARHGAP32A7KAX9 2087 aa11.29□□□□□ -0.6
SHMT2-228ENST00000557302 RFPL4AA6NLU0 287 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF879B4DU55 563 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 C22orf46C9J442 243 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 RFPL4AL1F8VTS6 287 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 F8VVB4 439 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 F8VWA3 439 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 SIGLEC5O15389 551 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 ENSAO43768 121 aaKnown RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 ECDO95905 644 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 KNG1P01042 644 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 TFF1P04155 84 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms