RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ERVK11-1P61568 191 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 METTL11BQ5VVY1 283 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 XAF1Q6GPH4 301 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 USP43Q70EL4 1123 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 CD177Q8N6Q3 437 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 ZNRF1Q8ND25 227 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 LY6G5BQ8NDX9 201 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 TMEM185AQ8NFB2 350 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 OR13C9Q8NGT0 318 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 HAVCR2Q8TDQ0 301 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 FBLIM1Q8WUP2 373 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 NRG4Q8WWG1 115 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 H1FXQ92522 213 aaKnown RBP11.33□□□□□ -0.6
SHMT2-219ENST00000555563 WDFY2Q96P53 400 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 TBX15Q96SF7 602 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 DCTN5Q9BTE1 182 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 COMMD4Q9H0A8 199 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 SIRPDQ9H106 197 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 ELL3Q9HB65 397 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-219ENST00000555563 HES4Q9HCC6 221 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 ESM1Q9NQ30 184 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 CAB39Q9Y376 341 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-219ENST00000555563 MAB21L2Q9Y586 359 aa11.33□□□□□ -0.6
SHMT2-219ENST00000555563 TRBV2A0A0J9YWF9 115 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 RFPL4AA6NLU0 287 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 RFPL4AL1F8VTS6 287 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 GPR37O15354 613 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 XPNPEP2O43895 674 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 TOX4O94842 621 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 NDUFB7P17568 137 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 POU3F4P49335 361 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 AQP4P55087 323 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 CAV3P56539 151 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 ARF6P62330 175 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 GPR157Q5UAW9 335 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 TMPRSS11AQ6ZMR5 421 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SLC25A26Q70HW3 274 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SIGLECL1Q8N7X8 197 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 DNAAF1Q8NEP3 725 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 OR5AK2Q8NH90 309 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 C8orf46Q8TAG6 207 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 RPS4Y2Q8TD47 263 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 RGP1Q92546 391 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-219ENST00000555563 TFAP2CQ92754 450 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SLAMF9Q96A28 289 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SPSB1Q96BD6 273 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SDSLQ96GA7 329 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 CEP19Q96LK0 163 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 MS4A7Q9GZW8 240 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-219ENST00000555563 ONECUT1Q9UBC0 465 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 CLEC2DQ9UHP7 191 aa11.32□□□□□ -0.6
SHMT2-219ENST00000555563 EXOSC1Q9Y3B2 195 aaKnown RBP11.32□□□□□ -0.6
SHMT2-219ENST00000555563 SOX21Q9Y651 276 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-219ENST00000555563 F8VVB4 439 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 F8VWA3 439 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 INMTO95050 263 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 PIPP12273 146 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-219ENST00000555563 PRKACBP22694 351 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 RBP2P50120 134 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 ATP1B3P54709 279 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 CDK5R1Q15078 307 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 RUSC1-AS1Q66K80 236 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 BRD3OSQ6XYD6 125 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 LHFPL2Q6ZUX7 228 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 C9orf139Q6ZV77 190 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-219ENST00000555563 TSEN15Q8WW01 171 aaKnown RBP11.31□□□□□ -0.6
SHMT2-219ENST00000555563 GGHQ92820 318 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 TMEM80Q96HE8 168 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 ZNF48Q96MX3 618 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-219ENST00000555563 OPALINQ96PE5 141 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 JMJD8Q96S16 334 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 ZCCHC4Q9H5U6 513 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 CNTD2Q9H8S5 307 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 MTCH1Q9NZJ7 389 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 CNOT2Q9NZN8 540 aaKnown RBP11.31□□□□□ -0.6
SHMT2-219ENST00000555563 OR14J1Q9UGF5 321 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 DHDHQ9UQ10 334 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 KPTNQ9Y664 436 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 STAB1Q9NY15 2570 aa11.31□□□□□ -0.6
SHMT2-219ENST00000555563 MXRA5Q9NR99 2828 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 MDFIC2A0A1B0GVS7 189 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 EFCAB10A6NFE3 127 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 SLC1A7O00341 560 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 LALBAP00709 142 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 KNG1P01042 644 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RPSAP08865 295 aaKnown RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 OCM2P0CE71 109 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 OCMP0CE72 109 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 PRDX2P32119 198 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 CAPZA1P52907 286 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 MTCP1P56278 107 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 ST3GAL4Q11206 333 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 CCDC58Q4VC31 144 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RPL22L1Q6P5R6 122 aaKnown RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RBMS3Q6XE24 437 aaKnown RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 AHSA2Q719I0 299 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RNF144BQ7Z419 303 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 ZNF561Q8N587 486 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 PARP16Q8N5Y8 322 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms