RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 PPP3R1P63098 170 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 C6orf141Q5SZD1 244 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 OR2G6Q5TZ20 316 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 PRIMA1Q86XR5 153 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 CMTM4Q8IZR5 234 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 KIR3DL3Q8N743 410 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 FAM216BQ8N7L0 139 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 OR51A4Q8NGJ6 313 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 OR13C9Q8NGT0 318 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF418Q8TF45 676 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 NPRL2Q8WTW4 380 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 GAFA1Q96PS6 74 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 CCL13Q99616 98 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 SUCNR1Q9BXA5 334 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 FAM234AQ9H0X4 552 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 SLC25A10Q9UBX3 287 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 OPN4Q9UHM6 478 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF222Q9UK12 451 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 RAB26Q9ULW5 256 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF281Q9Y2X9 895 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 A0A1W2PPH5 198 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 A6NIN4 97 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF879B4DU55 563 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 C22orf46C9J442 243 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 E9PI62 339 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 H3BSH0 61 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SYNGR1O43759 233 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 CDK1P06493 297 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 HCKP08631 526 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 PSG2P11465 335 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 RAB3AP20336 220 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 MAPK3P27361 379 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 RBMXP38159 391 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 BMXP51813 675 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 GMFBP60983 142 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 ERVK11-1P61568 191 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 IKZF1Q13422 519 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SPIN3Q5JUX0 258 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 METTL11BQ5VVY1 283 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 LAIR2Q6ISS4 152 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 USP43Q70EL4 1123 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SLC25A26Q70HW3 274 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 CALHM1Q8IU99 346 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SAXO1Q8IYX7 474 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 BPIFB2Q8N4F0 458 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 ZSCAN4Q8NAM6 433 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 OR10AC1Q8NH08 325 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 C8orf46Q8TAG6 207 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 PDCD1LG2Q9BQ51 273 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 CDCA4Q9BXL8 241 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SEBOXQ9HB31 216 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 SMURF1Q9HCE7 757 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 GLS2Q9UI32 602 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 RPUSD1Q9UJJ7 312 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 NUP50Q9UKX7 468 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 KPTNQ9Y664 436 aa11.93□□□□□ -0.5
CCDC88C-207ENST00000554051 IGKV1D-17A0A075B6S4 117 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 IGKV1-9A0A0C4DH69 117 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 GABRA2P47869 451 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 POU3F4P49335 361 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 GTF2A1P52655 376 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 PDCD1Q15116 288 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 Q499Y3 187 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 GPR157Q5UAW9 335 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 DMKNQ6E0U4 476 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 C1orf229Q6ZS94 237 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 BTN2A1Q7KYR7 527 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 ANGPTL5Q86XS5 388 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF485Q8NCK3 441 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 TMEM185AQ8NFB2 350 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 TBC1D15Q8TC07 691 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 ZFAND2BQ8WV99 257 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 GATAD2BQ8WXI9 593 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 TMEM106AQ96A25 262 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 DCTN5Q9BTE1 182 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 SNTG1Q9NSN8 517 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 ZFHX3Q15911 3703 aa11.92□□□□□ -0.5
CCDC88C-207ENST00000554051 DOCK11Q5JSL3 2073 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 JMJD1CQ15652 2540 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 AVPP01185 164 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 CHRM2P08172 466 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 FSTP19883 344 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 FGF12P61328 243 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 SLC35A2P78381 396 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 HOXA4Q00056 320 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 ACSM1Q08AH1 577 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 PDZK1IP1Q13113 114 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 BLMHQ13867 455 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 DMRTC1Q5HYR2 192 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF529Q6P280 563 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 RBMS3Q6XE24 437 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 C9orf139Q6ZV77 190 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 NANOGP1Q8N7R0 232 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 PPP1R35Q8TAP8 253 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 TMEM158Q8WZ71 300 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 EMG1Q92979 244 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 ZMAT3Q9HA38 289 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 CLEC2DQ9UHP7 191 aa11.91□□□□□ -0.5
CCDC88C-207ENST00000554051 WNK2Q9Y3S1 2297 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 IGKV1-27A0A075B6S5 117 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms