RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SAXO1Q8IYX7 474 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 BATF2Q8N1L9 274 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 C19orf18Q8NEA5 215 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 PXT1Q8NFP0 134 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 FOXRED1Q96CU9 486 aaPredicted RBP10.27□□□□□ -0.77
SHMT2-209ENST00000553949 CEP19Q96LK0 163 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 GFI1Q99684 422 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 NAA50Q9GZZ1 169 aaKnown RBP10.27□□□□□ -0.77
SHMT2-209ENST00000553949 WDR13Q9H1Z4 485 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 SMURF1Q9HCE7 757 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 RASL12Q9NYN1 266 aa10.27□□□□□ -0.77
SHMT2-209ENST00000553949 VPS13CQ709C8 3753 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 IGHV3OR15-7A0A075B7D8 119 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 TRAV38-1A0A0B4J264 116 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 ISPDA4D126 451 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 TRAPPC2LH3BP13 241 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 KDM4BO94953 1096 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 NXPH2O95156 264 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 GABARAPO95166 117 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 BCL3P20749 454 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 SDC2P34741 201 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 MDH2P40926 338 aaKnown RBP10.26□□□□□ -0.77
SHMT2-209ENST00000553949 NPBWR2P48146 333 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 PSMD7P51665 324 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 OR10A3P58181 314 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 ERVK11-1P61568 191 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 MICBQ29980 383 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 C1orf100Q5SVJ3 147 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 TEX36Q5VZQ5 186 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 ASCL4Q6XD76 172 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 TPRA1Q86W33 373 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 LRRC28Q86X40 367 aaPredicted RBP10.26□□□□□ -0.77
SHMT2-209ENST00000553949 Q8IYB0 196 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 DEFB108BQ8NET1 73 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 OR4D6Q8NGJ1 314 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 SEH1LQ96EE3 360 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 TMEM165Q9HC07 324 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 HES4Q9HCC6 221 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 RBFOX1Q9NWB1 397 aaKnown RBP10.26□□□□□ -0.77
SHMT2-209ENST00000553949 ING4Q9UNL4 249 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 MRPS28Q9Y2Q9 187 aaKnown RBP10.26□□□□□ -0.77
SHMT2-209ENST00000553949 V9GY05 133 aa10.26□□□□□ -0.77
SHMT2-209ENST00000553949 CCDC168Q8NDH2 2452 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 CDRT1O95170 752 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 SFTPBP07988 381 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 MUC1P15941 1255 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-209ENST00000553949 RAB3BP20337 219 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 TGFBR1P36897 503 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 NCS1P62166 190 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 MXD1Q05195 221 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 CTF1Q16619 201 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 SMIM21Q3B7S5 101 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 ZNF404Q494X3 552 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 TMEM155Q4W5P6 130 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 AWAT2Q6E213 333 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 GLIPR1L1Q6UWM5 242 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 ACP7Q6ZNF0 438 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 NR2C2APQ86WQ0 139 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 FAM90A1Q86YD7 464 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 CLVS1Q8IUQ0 354 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-209ENST00000553949 MUC20Q8N307 709 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-209ENST00000553949 OR6M1Q8NGM8 313 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 C12orf43Q96C57 262 aaKnown RBP10.25□□□□□ -0.77
SHMT2-209ENST00000553949 S100A13Q99584 98 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 TMEM246Q9BRR3 403 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 NARFLQ9H6Q4 476 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 ELL3Q9HB65 397 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-209ENST00000553949 RHOFQ9HBH0 211 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 PLGRKTQ9HBL7 147 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 NLKQ9UBE8 527 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 DNAJB11Q9UBS4 358 aa10.25□□□□□ -0.77
SHMT2-209ENST00000553949 DYSFO75923 2080 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 IGHV4-61A0A0C4DH41 118 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 A0A0G2JK05 382 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 SMIM30A4D0T7 59 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 RNF223E7ERA6 249 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 SLC17A2O00624 439 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 SLC22A1O15245 554 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 GYPAP02724 150 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 CLEC2LP0C7M8 214 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 CALCBP10092 127 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 USF1P22415 310 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-209ENST00000553949 HTR2CP28335 458 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 VBP1P61758 197 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 BLMHQ13867 455 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 RSU1Q15404 277 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 KCNJ8Q15842 424 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 RAB11BQ15907 218 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 ELP2Q6IA86 826 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 FAM166AQ6J272 317 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 FAM58AQ8N1B3 248 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 SPICQ8N5J4 248 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 OR5T2Q8NGG2 359 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 OR10K1Q8NGX5 313 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 TBC1D15Q8TC07 691 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 EMG1Q92979 244 aaKnown RBP10.24□□□□□ -0.77
SHMT2-209ENST00000553949 SLC25A28Q96A46 364 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 C1orf147Q96MC9 270 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-209ENST00000553949 GAL3ST1Q99999 423 aa10.24□□□□□ -0.77
SHMT2-209ENST00000553949 REG4Q9BYZ8 158 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms