RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 OR5H8P0DN80 308 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 OTX1P32242 354 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF84P51523 738 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 PIGPP57054 158 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM33P57088 247 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 PIGYQ3MUY2 71 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM268Q5VZI3 342 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 Q6ZRG5 221 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 TDHQ8IZJ6 230 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SPEM1Q8N4L4 309 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 FAM71E2Q8N5Q1 922 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 AKR7LQ8NHP1 331 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 RXFP4Q8TDU9 374 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ALKBH3Q96Q83 286 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 CMSS1Q9BQ75 279 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SEC11CQ9BY50 192 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 C1orf123Q9NWV4 160 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 C19orf25Q9UFG5 118 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 FOXD3Q9UJU5 478 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 DIDO1Q9BTC0 2240 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 DNAJC13O75165 2243 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 IGHV1-45A0A0A0MS14 117 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 IGKV1-12A0A0C4DH73 117 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 MEX3AA1L020 520 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF850A8MQ14 1090 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 GEMIN2O14893 280 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SNAPINO95295 136 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 DIRAS3O95661 229 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 IGKV1D-12P01611 117 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CRYBA1P05813 215 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 OR5AC1P0C628 307 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SPP1P10451 314 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CCL4P13236 92 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 LIFP15018 202 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 KCNJ3P48549 501 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FHITP49789 147 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CAV2P51636 162 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 HIST1H3AP68431 136 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PDZK1IP1Q13113 114 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF528Q3MIS6 628 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PHLDA2Q53GA4 152 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 HIST2H3PS2Q5TEC6 136 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 IL34Q6ZMJ4 242 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 Q6ZPA2 131 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 HIST2H3AQ71DI3 136 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 LYZL2Q7Z4W2 148 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SGPP2Q8IWX5 399 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 OR11L1Q8NGX0 322 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FGFBP3Q8TAT2 258 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FNDC9Q8TBE3 224 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PP6455Q8WZ26 134 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 DNAJB11Q9UBS4 358 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 GHRLQ9UBU3 117 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 DKKL1Q9UK85 242 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PADI1Q9ULC6 663 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 MRPS17Q9Y2R5 130 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PTRH2Q9Y3E5 179 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CRYM-AS1A6NIL9 109 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 DEDDO75618 318 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FCGR3AP08637 254 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PET100P0DJ07 73 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 COX6A1P12074 109 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 B4GALT1P15291 398 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SULT1A2P50226 295 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 ASCL1P50553 236 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 STARD6P59095 220 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 RSU1Q15404 277 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FAM189A2Q15884 450 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 DHRS11Q6UWP2 260 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 BTNL8Q6UX41 500 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 FOXL2NBQ6ZUU3 175 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 YRDCQ86U90 279 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 MAML2Q8IZL2 1156 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SPAG16Q8N0X2 631 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SAP25Q8TEE9 199 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 SECTM1Q8WVN6 248 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 MR1Q95460 341 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 AKR1E2Q96JD6 320 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 PRRX2Q99811 253 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CRLF2Q9HC73 371 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF175Q9Y473 711 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 RFNGQ9Y644 331 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 HS3ST3B1Q9Y662 390 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 URB1O60287 2271 aaKnown RBP6.52□□□□□ -1.37
LIMA1-213ENST00000552720 ASPMQ8IZT6 3477 aa6.52□□□□□ -1.37
LIMA1-213ENST00000552720 CCDC187A0A096LP49 1063 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 FAM157AC9JC47 383 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SGCEO43556 437 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 KLF7O75840 302 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 C1QL1O75973 258 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 F10P00742 488 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 MBPP02686 304 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 LCATP04180 440 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 CTSDP07339 412 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF32P17041 273 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 CRYGSP22914 178 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 CXCL12P48061 93 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 RAB13P51153 203 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 F2RL1P55085 397 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SURF2Q15527 256 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms