RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ASCL1P50553 236 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 NOVA1P51513 510 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 UCP2P55851 309 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SUMO3P55854 103 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 NHLH2Q02577 135 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 EIF3IQ13347 325 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 GUK1Q16774 197 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 IGSF11Q5DX21 431 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PHYHD1Q5SRE7 291 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 LYZL2Q7Z4W2 148 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SGPP2Q8IWX5 399 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 C20orf196Q8IYI0 205 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PLPP5Q8NEB5 264 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 FNDC9Q8TBE3 224 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 MARS2Q96GW9 593 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SPOCK3Q9BQ16 436 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 TM2D1Q9BX74 207 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PLEKHA2Q9HB19 425 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 METTL1Q9UBP6 276 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CELSR3Q9NYQ7 3312 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 IGHV1OR21-1A0A087WYE8 117 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1B0GX78 115 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RHPN2P1A8MT19 583 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 F5H5K5 113 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 M0R036 132 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RRP8O43159 456 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 TXNL1O43396 289 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 IFNA21P01568 189 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CTSDP07339 412 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SEC11BP0C7V7 166 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 FCGR2AP12318 317 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SFTPDP35247 375 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 OPRM1P35372 400 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PPP1CCP36873 323 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 GLP1RP43220 463 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ARL4DP49703 201 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 OR2B8PP59922 312 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF616Q08AN1 781 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PPA1Q15181 289 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 HIST3H3Q16695 136 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 C14orf28Q4W4Y0 310 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ACER2Q5QJU3 275 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 FAM69BQ5VUD6 431 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RTL6Q6ICC9 239 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ADAM5Q6NVV9 412 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RPUSD3Q6P087 351 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SLC16A14Q7RTX9 510 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SULF2Q8IWU5 870 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 D2HGDHQ8N465 521 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 OR10G3Q8NGC4 313 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 OR52M1Q8NGK5 317 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 STT3BQ8TCJ2 826 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RNF138Q8WVD3 245 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF501Q96CX3 271 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 MRPL38Q96DV4 380 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 BCL2L14Q9BZR8 327 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RGCCQ9H4X1 137 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ELL3Q9HB65 397 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 DECR2Q9NUI1 292 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 PPP4R1LQ9P1A2 415 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 MIOXQ9UGB7 285 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 TINAGQ9UJW2 476 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 RCL1Q9Y2P8 373 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 FBXO7Q9Y3I1 522 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 IGHV1OR15-9A0A0B4J2B8 117 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 FAM221AA4D161 298 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 PPIHO43447 177 aaKnown RBP4.72□□□□□ -1.65
LIMA1-212ENST00000552491 ANGPTL7O43827 346 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TIAF1O95411 115 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 OR5AC1P0C628 307 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM225BP0DP42 221 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF14P17017 642 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-212ENST00000552491 RAB5AP20339 215 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 CD38P28907 300 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 SULT1A1P50225 295 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 PIGPP57054 158 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM187Q14656 261 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 KCNMB1Q16558 191 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 OGFOD3Q6PK18 319 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 Q6ZPA2 131 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 ANKRD37Q7Z713 158 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 LINC00469Q8N7U9 141 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 ADPRHL1Q8NDY3 354 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 OR6X1Q8NH79 312 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TOMM40LQ969M1 308 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 PGAM5Q96HS1 289 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 WDR77Q9BQA1 342 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-212ENST00000552491 FAAP24Q9BTP7 215 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 ABHD14AQ9BUJ0 271 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 OR51M1Q9H341 326 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 SDHAF3Q9NRP4 125 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 KLRF1Q9NZS2 232 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 AK3Q9UIJ7 227 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 NXT1Q9UKK6 140 aaKnown RBP4.72□□□□□ -1.65
LIMA1-212ENST00000552491 PADI1Q9ULC6 663 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TNRC18O15417 2968 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-212ENST00000552491 IGKV1-27A0A075B6S5 117 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 CCDC187A0A096LP49 1063 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 TRBV11-1A0A0K0K1C0 115 aa4.72□□□□□ -1.65
LIMA1-212ENST00000552491 IFITM10A6NMD0 228 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms