RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CCL19Q99731 98 aa13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 NRIP2Q9BQI9 281 aa13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 NUDT16L1Q9BRJ7 211 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 URM1Q9BTM9 101 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 PPP1R3EQ9H7J1 279 aa13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 GCM1Q9NP62 436 aa13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 PEX16Q9Y5Y5 336 aa13.55□□□□□ -0.24
PRPF40A-212ENST00000545856 CELSR2Q9HCU4 2923 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 APCP25054 2843 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 A6NLC8 198 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 TMEM14DPA8MWL7 114 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 SRRM5B3KS81 715 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 LDLRAD4O15165 306 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 NCR1O76036 304 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 APOA1P02647 267 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 CSTBP04080 98 aaKnown RBP13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 GRPP07492 148 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 GTF2F2P13984 249 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 OR3A4PP47883 348 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 ERVK11-1P61568 191 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 ARL6IP1Q15041 203 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 SMIM21Q3B7S5 101 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 OR51T1Q8NGJ9 327 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 MCFD2Q8NI22 146 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 RAB40AQ8WXH6 277 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 SPACA5Q96QH8 159 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 VRK1Q99986 396 aaPredicted RBP13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 ZNF701Q9NV72 531 aaPredicted RBP13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 RNF7Q9UBF6 113 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 RAB22AQ9UL26 194 aa13.54□□□□□ -0.24
PRPF40A-212ENST00000545856 HECTD1Q9ULT8 2610 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 IGHV1-69-2A0A0G2JMI3 117 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 METTL21EPA6NDL7 271 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 CDIPTO14735 213 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 CLPXO76031 633 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 CPT2P23786 658 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 S100A5P33763 92 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 EFNA4P52798 201 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 FGF12P61328 243 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 CCL8P80075 99 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 IL13RA2Q14627 380 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 SPIN3Q5JUX0 258 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 UBE2NLQ5JXB2 153 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 RAB12Q6IQ22 244 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 LRRC28Q86X40 367 aaPredicted RBP13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 C11orf53Q8IXP5 236 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 GTF3AQ92664 365 aaKnown RBP13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 RDH5Q92781 318 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 WDFY2Q96P53 400 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 ABCG5Q9H222 651 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 HES4Q9HCC6 221 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 ARID1AO14497 2285 aa13.53□□□□□ -0.24
PRPF40A-212ENST00000545856 F12P00748 615 aaPredicted RBP13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 LHBP01229 141 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 CHRM2P08172 466 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 CSF3P09919 207 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 VSIG8P0DPA2 414 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 CAV3P56539 151 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 QRFPP83859 136 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 KCNJ8Q15842 424 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 MPV17LQ2QL34 196 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 HFEQ30201 348 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 C2orf76Q3KRA6 126 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 PRAMEF6Q5VXH4 476 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 ZNF787Q6DD87 383 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 MOGAT3Q86VF5 341 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 OR51D1Q8NGF3 324 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 OR5D18Q8NGL1 313 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 LGALS14Q8TCE9 139 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 NINJ1Q92982 152 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 RFT1Q96AA3 541 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 TM2D1Q9BX74 207 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 TMEM59Q9BXS4 323 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 SPACA1Q9HBV2 294 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 C1orf123Q9NWV4 160 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 MTCH1Q9NZJ7 389 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 OR5V1Q9UGF6 321 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 GLS2Q9UI32 602 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 ING4Q9UNL4 249 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 USF3Q68DE3 2245 aa13.52□□□□□ -0.25
PRPF40A-212ENST00000545856 hCG_1807616A0A1W2PRN6 198 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 SPRY1O43609 319 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 SYNGR1O43759 233 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 SLC2A2P11168 524 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 MUC1P15941 1255 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 ART1P52961 327 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 MPPED2Q15777 294 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 BAIAP2L2Q6UXY1 529 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 OSR2Q8N2R0 312 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 C15orf40Q8WUR7 153 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 GSX2Q9BZM3 304 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 DNTTIP1Q9H147 329 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 IFT22Q9H7X7 185 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 ELL3Q9HB65 397 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 HMG20AQ9NP66 347 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 BEX4Q9NWD9 120 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 RHBDL2Q9NX52 303 aa13.51□□□□□ -0.25
PRPF40A-212ENST00000545856 IGKV1-12A0A0C4DH73 117 aa13.5□□□□□ -0.25
PRPF40A-212ENST00000545856 TMEM272A0A1B0GTI8 110 aa13.5□□□□□ -0.25
PRPF40A-212ENST00000545856 SMIM30A4D0T7 59 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms