RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	FAM157A	C9JC47	383 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	FBXO24	O75426	580 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ISG15	P05161	165 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	FCGR3A	P08637	254 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	VSIG8	P0DPA2	414 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	PSMB6	P28072	239 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	GNG10	P50151	68 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	RAP1B	P61224	184 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	RAP1A	P62834	184 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF239	Q16600	458 aa	Known RBP	13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ADAM5	Q6NVV9	412 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	C1QL4	Q86Z23	238 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	FAM219A	Q8IW50	185 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	TMEM104	Q8NE00	496 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	MEGF10	Q96KG7	1140 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	GPR61	Q9BZJ8	451 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ASCL3	Q9NQ33	180 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	SHPK	Q9UHJ6	478 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ZFHX4	Q86UP3	3567 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	LOC400499	M0QZD8	3231 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	hCG_1809904	A0A1W2PP81	198 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		A0A1W2PPH5	198 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		A0A1W2PR64	198 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		A0A1W2PRV1	198 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	C7orf77	A4D0Y5	90 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF736	B4DX44	427 aa	Predicted RBP	13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	CYB5A	P00167	134 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	IFNA17	P01571	189 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	MB	P02144	154 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	NR2C1	P13056	603 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ZBTB25	P24278	435 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	CLEC2A	Q6UVW9	174 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	LYG2	Q86SG7	212 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	TRAPPC6B	Q86SZ2	158 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	FADS6	Q8N9I5	356 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	DTD1	Q8TEA8	209 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	KIRREL1	Q96J84	757 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	ANGPTL4	Q9BY76	406 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	PRDM13	Q9H4Q3	707 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	POLR1D	Q9Y2S0	133 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268	MYO7B	Q6PIF6	2116 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		C9JQL5	133 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	ETV2	O00321	342 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	IFNA10	P01566	189 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	PGA4	P0DJD7	388 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	PGA3	P0DJD8	388 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	S100A2	P29034	98 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CD80	P33681	288 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CDX1	P47902	265 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	DVL1P1	P54792	670 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CLRN1	P58418	232 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	OR2B8P	P59922	312 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	LBH	Q53QV2	105 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	DCAF10	Q5QP82	559 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	MARS2	Q96GW9	593 aa	Known RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	AKR1E2	Q96JD6	320 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	FAM71F1	Q96KD3	344 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CHST5	Q9GZS9	411 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	BANF2	Q9H503	90 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	ALKBH4	Q9NXW9	302 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CFAP47	Q6ZTR5	3102 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	DCHS1	Q96JQ0	3298 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268		A0A0A6YYD4	124 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	MARCH11	A6NNE9	402 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	TRAF3IP2	O43734	574 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	HIST1H1B	P16401	226 aa	Known RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	SLC6A9	P48067	706 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	GSK3A	P49840	483 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	MMP16	P51512	607 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	PRSS12	P56730	875 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF260	Q3ZCT1	412 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	C1orf100	Q5SVJ3	147 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	NPRL2	Q8WTW4	380 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	MITD1	Q8WV92	249 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	DCUN1D4	Q92564	292 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	ISOC2	Q96AB3	205 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF775	Q96BV0	537 aa	Predicted RBP	13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	MRGPRX4	Q96LA9	322 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	GNRHR2	Q96P88	292 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	FN3KRP	Q9HA64	309 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	SLC17A5	Q9NRA2	495 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	PARPBP	Q9NWS1	579 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	CSAG2	Q9Y5P2	127 aa		13.12	□□□□□ -0.31
CHFR-223	ENST00000544268	F10	P00742	488 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	CRH	P06850	196 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	SNRNP70	P08621	437 aa	Known RBP	13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	CD37	P11049	281 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF17	P17021	662 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	CD82	P27701	267 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	OR3A4P	P47883	348 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	QRFP	P83859	136 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	NHLH1	Q02575	133 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	SLC25A53	Q5H9E4	307 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	ATP1A1-AS1	Q5TC04	95 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	AWAT2	Q6E213	333 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	DNM1P34	Q6PK57	102 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	SLC25A42	Q86VD7	318 aa		13.11	□□□□□ -0.31
CHFR-223	ENST00000544268	UEVLD	Q8IX04	471 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms