RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SFRP4Q6FHJ7 346 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 ANKRD13BQ86YJ7 626 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 Q8IYB0 196 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 MUC20Q8N307 709 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 PXT1Q8NFP0 134 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 ZNF488Q96MN9 340 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 NKX3-1Q99801 234 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 FAM192AQ9GZU8 254 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 WDR13Q9H1Z4 485 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 CNTD2Q9H8S5 307 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 RHOFQ9HBH0 211 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 TMEM165Q9HC07 324 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 SMURF1Q9HCE7 757 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 AK6Q9Y3D8 172 aaKnown RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 TRAV38-1A0A0B4J264 116 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 IGKV1-12A0A0C4DH73 117 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 SHISA3A0PJX4 238 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 C3orf80F5H4A9 247 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 WNT9BO14905 357 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 NXPH2O95156 264 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 IGKV1D-12P01611 117 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 GMFBP60983 142 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 CHD3Q12873 2000 aaKnown RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 KCNJ8Q15842 424 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 MICBQ29980 383 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 TMEM155Q4W5P6 130 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 GPR107Q5VW38 600 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 ASCL4Q6XD76 172 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 TPRA1Q86W33 373 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 C19orf18Q8NEA5 215 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 DEFB108BQ8NET1 73 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 S100A13Q99584 98 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 RNF167Q9H6Y7 350 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 HES4Q9HCC6 221 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 DNAJB11Q9UBS4 358 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 V9GY05 133 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 VPS13CQ709C8 3753 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 TANC2Q9HCD6 1990 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 TEP1Q99973 2627 aaKnown RBP14.35□□□□□ -0.11
LIG1-204ENST00000542460 KDM4BO94953 1096 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 RAB3BP20337 219 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 LSM3P62310 102 aaKnown RBP14.35□□□□□ -0.11
LIG1-204ENST00000542460 SMIM21Q3B7S5 101 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 ZNF404Q494X3 552 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 C1orf100Q5SVJ3 147 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 C1QL2Q7Z5L3 287 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 FAM90A1Q86YD7 464 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 C12orf43Q96C57 262 aaKnown RBP14.35□□□□□ -0.11
LIG1-204ENST00000542460 GFI1Q99684 422 aa14.35□□□□□ -0.11
LIG1-204ENST00000542460 MRPS28Q9Y2Q9 187 aaKnown RBP14.35□□□□□ -0.11
LIG1-204ENST00000542460 PRRC2AP48634 2157 aaKnown RBP14.34□□□□□ -0.11
LIG1-204ENST00000542460 MAP1AP78559 2803 aaPredicted RBP14.34□□□□□ -0.11
LIG1-204ENST00000542460 F8VVB4 439 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 F8VWA3 439 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 NDUFA2O43678 99 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 CDRT1O95170 752 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 BCL3P20749 454 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 NPBWR2P48146 333 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 RSU1Q15404 277 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 ACP7Q6ZNF0 438 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 SLC16A12Q6ZSM3 486 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 BATF2Q8N1L9 274 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 SPICQ8N5J4 248 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 OR4D6Q8NGJ1 314 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 OR6M1Q8NGM8 313 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 SEH1LQ96EE3 360 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 GAL3ST1Q99999 423 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 TMEM246Q9BRR3 403 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 REG4Q9BYZ8 158 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 METTL9Q9H1A3 318 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 ELL3Q9HB65 397 aaPredicted RBP14.34□□□□□ -0.11
LIG1-204ENST00000542460 PLGRKTQ9HBL7 147 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 NLKQ9UBE8 527 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 ING4Q9UNL4 249 aa14.34□□□□□ -0.11
LIG1-204ENST00000542460 IGHV3OR15-7A0A075B7D8 119 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 RNF223E7ERA6 249 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 ZNF780AO75290 641 aaPredicted RBP14.33□□□□□ -0.12
LIG1-204ENST00000542460 GABARAPO95166 117 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 SFTPBP07988 381 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 USF1P22415 310 aaPredicted RBP14.33□□□□□ -0.12
LIG1-204ENST00000542460 HTR2CP28335 458 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 SDC2P34741 201 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 AWAT2Q6E213 333 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 GLIPR1L1Q6UWM5 242 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 FAM58AQ8N1B3 248 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 TBC1D15Q8TC07 691 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 EMG1Q92979 244 aaKnown RBP14.33□□□□□ -0.12
LIG1-204ENST00000542460 NAA50Q9GZZ1 169 aaKnown RBP14.33□□□□□ -0.12
LIG1-204ENST00000542460 NARFLQ9H6Q4 476 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 PCDHB16Q9NRJ7 776 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 RBFOX1Q9NWB1 397 aaKnown RBP14.33□□□□□ -0.12
LIG1-204ENST00000542460 IL36GQ9NZH8 169 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 GHRLQ9UBU3 117 aa14.33□□□□□ -0.12
LIG1-204ENST00000542460 IGHV4-61A0A0C4DH41 118 aa14.32□□□□□ -0.12
LIG1-204ENST00000542460 OR2AT4A6NND4 320 aa14.32□□□□□ -0.12
LIG1-204ENST00000542460 SLC17A2O00624 439 aa14.32□□□□□ -0.12
LIG1-204ENST00000542460 SLC22A1O15245 554 aa14.32□□□□□ -0.12
LIG1-204ENST00000542460 RANBP1P43487 201 aa14.32□□□□□ -0.12
LIG1-204ENST00000542460 BMXP51813 675 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms