RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 OR5H8P0DN80 308 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 CCL1P22362 96 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 ITGA3P26006 1051 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 PPP1CCP36873 323 aaKnown RBP17.73■□□□□ 0.43
TMEM260-203ENST00000539559 OR52M1Q8NGK5 317 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 LYPD6BQ8NI32 183 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 METTL7AQ9H8H3 244 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 GPR173Q9NS66 373 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 FAM212BQ9NTI7 297 aaPredicted RBP17.73■□□□□ 0.43
TMEM260-203ENST00000539559 TUBD1Q9UJT1 453 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 ZDHHC8Q9ULC8 765 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 B3GALT1Q9Y5Z6 326 aa17.73■□□□□ 0.43
TMEM260-203ENST00000539559 SDK2Q58EX2 2172 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 CRYM-AS1A6NIL9 109 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 ZNF726A6NNF4 738 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 CLN5O75503 358 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 GAPDHP04406 335 aaKnown RBP17.72■□□□□ 0.43
TMEM260-203ENST00000539559 RAB5AP20339 215 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 POLR2GP62487 172 aaKnown RBP eCLIP17.72■□□□□ 0.43
TMEM260-203ENST00000539559 FAM3AP98173 230 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 OR5L1Q8NGL2 311 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 MARS2Q96GW9 593 aaKnown RBP17.72■□□□□ 0.43
TMEM260-203ENST00000539559 ZNF251Q9BRH9 671 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 PRF1P14222 555 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 PRAMEF20Q5VT98 475 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 ANKRD37Q7Z713 158 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 UBALD2Q8IYN6 164 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 UBAC2Q8NBM4 344 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 RARRES2Q99969 163 aa17.72■□□□□ 0.43
TMEM260-203ENST00000539559 ZNF850A8MQ14 1090 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 OR2J2O76002 312 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 TIAF1O95411 115 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 PNLIPP16233 465 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 SULT1A1P50225 295 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 RPUSD3Q6P087 351 aaKnown RBP17.71■□□□□ 0.43
TMEM260-203ENST00000539559 BATF2Q8N1L9 274 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 OR11L1Q8NGX0 322 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 OR2AE1Q8NHA4 323 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 AKR7LQ8NHP1 331 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 GUCD1Q96NT3 240 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 SERPINE3A8MV23 424 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 DANCRP0C864 163 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 PTGDSP41222 190 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 ZNF84P51523 738 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 ACER2Q5QJU3 275 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 D2HGDHQ8N465 521 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 NFAM1Q8NET5 270 aaPredicted RBP17.71■□□□□ 0.43
TMEM260-203ENST00000539559 GNRHR2Q96P88 292 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 PIGQQ9BRB3 760 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 CHRNA10Q9GZZ6 450 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 C19orf12Q9NSK7 152 aa17.71■□□□□ 0.43
TMEM260-203ENST00000539559 PUS1Q9Y606 427 aaKnown RBP eCLIP17.71■□□□□ 0.43
TMEM260-203ENST00000539559 GPR37O15354 613 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 CTSDP07339 412 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 GLP1RP43220 463 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 CEBPGP53567 150 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 TMEM182Q6ZP80 229 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 EDARADDQ8WWZ3 215 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 ZNF501Q96CX3 271 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 BCL2L14Q9BZR8 327 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 AK3Q9UIJ7 227 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 ANXA10Q9UJ72 324 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 FAM230AA0A1W2PPH8 454 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 S100A8P05109 93 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 HEXBP07686 556 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 SURF2Q15527 256 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 RSPO1Q2MKA7 263 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 PLPP5Q8NEB5 264 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 ABHD14AQ9BUJ0 271 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 SEBOXQ9HB31 216 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-203ENST00000539559 VPS13AQ96RL7 3174 aa17.7■□□□□ 0.42
TMEM260-203ENST00000539559 EIF1BO60739 113 aaKnown RBP17.69■□□□□ 0.42
TMEM260-203ENST00000539559 EIF1P41567 113 aaKnown RBP17.69■□□□□ 0.42
TMEM260-203ENST00000539559 SNAI3Q3KNW1 292 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 OR6X1Q8NH79 312 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 FAM213BQ8TBF2 198 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 MRGPRX4Q96LA9 322 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 POMT1Q9Y6A1 747 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 SLC33A1O00400 549 aaPredicted RBP17.69■□□□□ 0.42
TMEM260-203ENST00000539559 ZNF239Q16600 458 aaKnown RBP17.69■□□□□ 0.42
TMEM260-203ENST00000539559 RNF212Q495C1 297 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 RTN4IP1Q8WWV3 396 aaPredicted RBP17.69■□□□□ 0.42
TMEM260-203ENST00000539559 FREM2Q5SZK8 3169 aa17.69■□□□□ 0.42
TMEM260-203ENST00000539559 DHRS3O75911 302 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 PAX6P26367 422 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 ABCA11PQ4W5N1 156 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 C5orf24Q7Z6I8 188 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 ZNF565Q8N9K5 539 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 JSRP1Q96MG2 331 aaPredicted RBP17.68■□□□□ 0.42
TMEM260-203ENST00000539559 CEP192Q8TEP8 1941 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 SUMO3P55854 103 aaPredicted RBP17.68■□□□□ 0.42
TMEM260-203ENST00000539559 MTCP1P56278 107 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 GRB2P62993 217 aaKnown RBP17.68■□□□□ 0.42
TMEM260-203ENST00000539559 CCL20P78556 96 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 PLXDC1Q8IUK5 500 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 HAS2Q92819 552 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 ZNF837Q96EG3 531 aaPredicted RBP17.68■□□□□ 0.42
TMEM260-203ENST00000539559 OXGR1Q96P68 337 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 TM2D1Q9BX74 207 aa17.68■□□□□ 0.42
TMEM260-203ENST00000539559 LUZP4Q9P127 313 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms