RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 TAAR9Q96RI9 348 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 RBM24Q9BX46 236 aaKnown RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 NAA60Q9H7X0 242 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 TUBA4BQ9H853 241 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 FGF21Q9NSA1 209 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 TUBD1Q9UJT1 453 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 TINAGQ9UJW2 476 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 NSG1A0A0A6YYJ2 146 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 EPOPA6NHQ4 379 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 KLK2P20151 261 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 HAGHQ16775 308 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PDZD11Q5EBL8 140 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 NECAP2Q9NVZ3 263 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PLEK2Q9NYT0 353 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 STRAPQ9Y3F4 350 aaKnown RBP9.85□□□□□ -0.83
SYNE1-237ENST00000539504 CCDC85CA6NKD9 419 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 CDRT15L2A8MXV6 281 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF814B7Z6K7 855 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 WRBO00258 174 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 TRAF3IP2O43734 574 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PRF1P14222 555 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 TAGLN2P37802 199 aaKnown RBP9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PPA1Q15181 289 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 OR52M1Q8NGK5 317 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 OR2G3Q8NGZ4 309 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PIGQQ9BRB3 760 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PAPOLGQ9BWT3 736 aaKnown RBP9.85□□□□□ -0.83
SYNE1-237ENST00000539504 BRWD1Q9NSI6 2320 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 IGHV2-5P01817 119 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 DBHP09172 617 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 DUSP1P28562 367 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 CD38P28907 300 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 UBE2KP61086 200 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 RAB1AP62820 205 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 PDCD1Q15116 288 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 RTL6Q6ICC9 239 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 SLC25A47Q6Q0C1 308 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 HIST2H3AQ71DI3 136 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 P4HA3Q7Z4N8 544 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 EDARADDQ8WWZ3 215 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 GNRHR2Q96P88 292 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 GGACTQ9BVM4 153 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 NKX2-4Q9H2Z4 354 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 RFNGQ9Y644 331 aa9.85□□□□□ -0.83
SYNE1-237ENST00000539504 DHRS3O75911 302 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 HERV-K104P61576 105 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OR2B11Q5JQS5 317 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OR10G3Q8NGC4 313 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 LYZL4Q96KX0 146 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 MRGPRX4Q96LA9 322 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 NELFAQ9H3P2 528 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 AK3Q9UIJ7 227 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 MYO7BQ6PIF6 2116 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 FAM24AA6NFZ4 105 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 LY86O95711 162 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 CSNK1A1P48729 337 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF133P52736 654 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-237ENST00000539504 SUMO3P55854 103 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-237ENST00000539504 RPS23P62266 143 aaKnown RBP9.84□□□□□ -0.83
SYNE1-237ENST00000539504 NSUN5P2Q63ZY6 315 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 SLC22A25Q6T423 547 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 PLXDC1Q8IUK5 500 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 LGI3Q8N145 548 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 BATF2Q8N1L9 274 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OR11L1Q8NGX0 322 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 LYPD6BQ8NI32 183 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 SYT3Q9BQG1 590 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 METTL9Q9H1A3 318 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 LMAN1LQ9HAT1 526 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 PCDH15Q96QU1 1955 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 A0A1W2PNV4 684 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 MASP2O00187 686 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 NDUFS6O75380 124 aaKnown RBP9.84□□□□□ -0.83
SYNE1-237ENST00000539504 GPR157Q5UAW9 335 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 PRAMEF20Q5VT98 475 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 APCDD1LQ8NCL9 501 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OR6X1Q8NH79 312 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OR2AE1Q8NHA4 323 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 HAS2Q92819 552 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 MR1Q95460 341 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 S100PBPQ96BU1 408 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 OXGR1Q96P68 337 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 GINS3Q9BRX5 216 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 PNRC2Q9NPJ4 139 aaKnown RBP9.84□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF581Q9P0T4 197 aa9.84□□□□□ -0.83
SYNE1-237ENST00000539504 FOSL2P15408 326 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 TMEM187Q14656 261 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 PLPPR5Q32ZL2 321 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 SPIN3Q5JUX0 258 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 LFNGQ8NES3 379 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 GJC3Q8NFK1 279 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 MAGT1Q9H0U3 335 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 LIME1Q9H400 295 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 M0R135 149 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 DUX1O43812 170 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 NXPH3O95157 252 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 ONECUT2O95948 504 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 IGHV2-70P01814 119 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 MSR1P21757 451 aa9.83□□□□□ -0.84
SYNE1-237ENST00000539504 NOVA1P51513 510 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms