RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF555Q8NEP9 628 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 OR52I1Q8NGK6 324 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 OR10AC1Q8NH08 325 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 PP6455Q8WZ26 134 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 ZDHHC16Q969W1 377 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 SLC25A28Q96A46 364 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 ISG20L2Q9H9L3 353 aaKnown RBP12.16□□□□□ -0.46
USP28-204ENST00000537642 SIRT7Q9NRC8 400 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 MRPS18AQ9NVS2 196 aaKnown RBP12.16□□□□□ -0.46
USP28-204ENST00000537642 ERVK13-1Q9NX77 482 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 IGKV1-9A0A0C4DH69 117 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 OR4C45A6NMZ5 311 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 F8VVB4 439 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 F8VWA3 439 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 HAX1O00165 279 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 HOXA3O43365 443 aaPredicted RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 FADS2O95864 444 aaKnown RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 SERPINA3P01011 423 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 HKR1P10072 659 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 CFPP27918 469 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 RAB40BQ12829 278 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 ALKBH1Q13686 389 aaKnown RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 SMN1Q16637 294 aaKnown RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 LRRC36Q1X8D7 754 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 AWAT1Q58HT5 328 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 LPCAT4Q643R3 524 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 METAP1DQ6UB28 335 aaPredicted RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 Q6YL49 198 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 SYS1Q8N2H4 156 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 PIP4P2Q8N4L2 257 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 OR51A4Q8NGJ6 313 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 FGGYQ96C11 551 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 BORCS8Q96FH0 119 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 MRPL48Q96GC5 212 aaKnown RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 NOX4Q9NPH5 578 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 INPP5EQ9NRR6 644 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 MTCH1Q9NZJ7 389 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 RPL36Q9Y3U8 105 aaKnown RBP12.15□□□□□ -0.46
USP28-204ENST00000537642 FBN3Q75N90 2809 aa12.15□□□□□ -0.46
USP28-204ENST00000537642 A0A1W2PQ09 198 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 RNASEK-C17orf49H0YIS7 233 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 M0R1W7 72 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 CLIC3O95833 236 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 ATF1P18846 271 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 CAPZA1P52907 286 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 KLRD1Q13241 179 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 RCN1Q15293 331 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 CNN3Q15417 329 aaKnown RBP12.14□□□□□ -0.47
USP28-204ENST00000537642 C1orf122Q6ZSJ8 110 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 UTS2BQ765I0 119 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 EGFL6Q8IUX8 553 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 ZNF561Q8N587 486 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 DNAAF1Q8NEP3 725 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 TNFRSF14Q92956 283 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 SLAMF9Q96A28 289 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 C19orf12Q9NSK7 152 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 OR14J1Q9UGF5 321 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 HHLA2Q9UM44 414 aa12.14□□□□□ -0.47
USP28-204ENST00000537642 TRBV23-1A0A0A0MS06 115 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 A0A0U1RQK1 487 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 E9PI62 339 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 SLC1A7O00341 560 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 INMTO95050 263 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 KNG1P01042 644 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 MELTFP08582 738 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 ZNF20P17024 532 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 PEX2P28328 305 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 RBP2P50120 134 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 KLHL22Q53GT1 634 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 ZNF691Q5VV52 312 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 C16orf87Q6PH81 154 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 SLC25A26Q70HW3 274 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 FAM185AQ8N0U4 392 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 ZNF676Q8N7Q3 588 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 OR13C3Q8NGS6 347 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 CNIH3Q8TBE1 160 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 TAF15Q92804 592 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP28-204ENST00000537642 CEP19Q96LK0 163 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 MYCBPQ99417 103 aaPredicted RBP12.13□□□□□ -0.47
USP28-204ENST00000537642 FGF20Q9NP95 211 aaPredicted RBP12.13□□□□□ -0.47
USP28-204ENST00000537642 TNFRSF19Q9NS68 423 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 DSCAML1Q8TD84 2053 aa12.13□□□□□ -0.47
USP28-204ENST00000537642 ANKRD65E5RJM6 399 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 LIMS3P0CW19 117 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 LIMS4P0CW20 117 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 AZGP1P25311 298 aaKnown RBP12.12□□□□□ -0.47
USP28-204ENST00000537642 ATP1B3P54709 279 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 GUCA2AQ02747 115 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 PACRGLQ8N7B6 248 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 C3orf56Q8N813 242 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 CYGBQ8WWM9 190 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 JAM3Q9BX67 310 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 METTL8Q9H825 291 aaKnown RBP12.12□□□□□ -0.47
USP28-204ENST00000537642 UNKLQ9H9P5 680 aaKnown RBP12.12□□□□□ -0.47
USP28-204ENST00000537642 C8orf4Q9NR00 106 aa12.12□□□□□ -0.47
USP28-204ENST00000537642 A0A1W2PRD5 423 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 A0A1W2PRF3 423 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 A0A1W2PRM7 423 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 NPFFO15130 113 aa12.11□□□□□ -0.47
USP28-204ENST00000537642 ZFPL1O95159 310 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms