RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 OR6C3Q9NZP0 311 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ONECUT1Q9UBC0 465 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 CCNL1Q9UK58 526 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 ERG28Q9UKR5 140 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PLAGL1Q9UM63 463 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 MRPS33Q9Y291 106 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 SIGLEC9Q9Y336 463 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 STYXL1Q9Y6J8 313 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PATJQ8NI35 1801 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 MAST2Q6P0Q8 1798 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 C13orf42A0A1B0GVH6 325 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 SLC22A20A6NK97 555 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ZNF705GA8MUZ8 300 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 F5H5T6 163 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 M0QZ24 198 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SPRY2O43597 315 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 PLPP2O43688 288 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 OR1F1O43749 312 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 FGF17O60258 216 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ENTPD6O75354 484 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 CLDN11O75508 207 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NDUFB6O95139 128 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NUDT3O95989 172 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NRASP01111 189 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 KLKB1P03952 638 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 HLA-DPB1P04440 258 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 REG1AP05451 166 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SERPINA7P05543 415 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 DBIP07108 87 aaKnown RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 CTSLP07711 333 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 MMP7P09237 267 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 C8orf89P0DMQ9 161 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ST6GAL1P15907 406 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 AZU1P20160 251 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 HTR1DP28221 377 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 CCKBRP32239 447 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 FAUP35544 74 aaKnown RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 CHI3L1P36222 383 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 HMGCS2P54868 508 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 MFAP4P55083 255 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ATP5J2P56134 94 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 TAS2R30P59541 319 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SNRPFP62306 86 aaKnown RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 LCN6P62502 163 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SRSF1Q07955 248 aaKnown RBP eCLIP4.79□□□□□ -1.64
CD44-236ENST00000533222 ST3GAL3Q11203 375 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 MFAP5Q13361 173 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 RUNX3Q13761 415 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 RAB30Q15771 203 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ITPRIPL2Q3MIP1 535 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SLC25A52Q3SY17 297 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 HBMQ6B0K9 141 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 RTL6Q6ICC9 239 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 RHBDD2Q6NTF9 364 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ANKRD16Q6P6B7 361 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NCEH1Q6PIU2 408 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 CLEC20AQ6ZU45 233 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 H1FNTQ75WM6 255 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 KLHDC8AQ8IYD2 350 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 CA13Q8N1Q1 262 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 BMPERQ8N8U9 685 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 FER1L6-AS1Q8NA97 138 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 OR11G2Q8NGC1 345 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 OR5A1Q8NGJ0 315 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 OR52B4Q8NGK2 314 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 GRAPLQ8TC17 118 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 SMIM4Q8WVI0 70 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 PSMF1Q92530 271 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 GLYATL1Q969I3 302 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 DDIT4LQ96D03 193 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SLAMF6Q96DU3 332 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ZMYND19Q96E35 227 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 SLC35G5Q96KT7 338 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 TBL1YQ9BQ87 522 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ADAT1Q9BUB4 502 aaKnown RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 SLC17A9Q9BYT1 436 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SLC35B3Q9H1N7 401 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 ALG9Q9H6U8 611 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NMRAL1Q9HBL8 299 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 INPP5EQ9NRR6 644 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 DCAF13Q9NV06 445 aaKnown RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 ZNF70Q9UC06 446 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 MMP17Q9ULZ9 603 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 PSG8Q9UQ74 426 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 SH2B3Q9UQQ2 575 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 NTNG1Q9Y2I2 539 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 UFC1Q9Y3C8 167 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 OR10H1Q9Y4A9 318 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 TSSC4Q9Y5U2 329 aaPredicted RBP4.79□□□□□ -1.64
CD44-236ENST00000533222 ENPP4Q9Y6X5 453 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 COL24A1Q17RW2 1714 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 TNS2Q63HR2 1409 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 BTAF1O14981 1849 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 CITO14578 2027 aa4.79□□□□□ -1.64
CD44-236ENST00000533222 MEGF6O75095 1541 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 A0A0G2JMZ2 1700 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 LRRC37A2A6NM11 1700 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 LRRC37AA6NMS7 1700 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 NRAPQ86VF7 1730 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms