RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ZNF222Q9UK12 451 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 RAB26Q9ULW5 256 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 DHDHQ9UQ10 334 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 ZNF281Q9Y2X9 895 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 RRP15Q9Y3B9 282 aaKnown RBP16.48■□□□□ 0.23
CPSF1-209ENST00000532725 ADRA2CP18825 462 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 MTCP1P56278 107 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 SLC35A2P78381 396 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 RNF144BQ7Z419 303 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 FGFRL1Q8N441 504 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 TEX29Q8N6K0 151 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 FAM216BQ8N7L0 139 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 GPR148Q8TDV2 347 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 SPSB1Q96BD6 273 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 MED30Q96HR3 178 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 GAFA1Q96PS6 74 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 CDCA4Q9BXL8 241 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 ERGIC3Q9Y282 383 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 PCDHGB5Q9Y5G0 923 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 AUP1Q9Y679 476 aa16.47■□□□□ 0.23
CPSF1-209ENST00000532725 CUBNO60494 3623 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 F8VVB4 439 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 F8VWA3 439 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 ECDO95905 644 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-209ENST00000532725 IFNA2P01563 188 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 WNT4P56705 351 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 ZNF529Q6P280 563 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 CRIP3Q6Q6R5 217 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 BTNL3Q6UXE8 466 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 LHFPL2Q6ZUX7 228 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 SLC25A26Q70HW3 274 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 BTN2A1Q7KYR7 527 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 C1QL2Q7Z5L3 287 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 ZFP41Q8N8Y5 198 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 OR13C9Q8NGT0 318 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 NANPQ8TBE9 248 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 TSEN15Q8WW01 171 aaKnown RBP16.46■□□□□ 0.23
CPSF1-209ENST00000532725 SDSLQ96GA7 329 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 PGLYRP3Q96LB9 341 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 OPALINQ96PE5 141 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 TPRKBQ9Y3C4 175 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 MAB21L2Q9Y586 359 aa16.46■□□□□ 0.23
CPSF1-209ENST00000532725 ATRQ13535 2644 aa16.46■□□□□ 0.22
CPSF1-209ENST00000532725 RFPL4AA6NLU0 287 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 RFPL4AL1F8VTS6 287 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 MYL12BO14950 172 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 SIGLEC5O15389 551 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 NDUFB3O43676 98 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 NXPH2O95156 264 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 FSHBP01225 129 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 SELLP14151 372 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 GABRA2P47869 451 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 SOX2P48431 317 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 TAS2R43P59537 309 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 RPS11P62280 158 aaKnown RBP eCLIP16.45■□□□□ 0.22
CPSF1-209ENST00000532725 IL13RA1P78552 427 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 IKZF1Q13422 519 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 IRF3Q14653 427 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 DGUOKQ16854 277 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 SMIM21Q3B7S5 101 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 ASPHD2Q6ICH7 369 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 BATF2Q8N1L9 274 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 CD177Q8N6Q3 437 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 CNBD2Q96M20 576 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 MRI1Q9BV20 369 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 METRNQ9UJH8 293 aa16.45■□□□□ 0.22
CPSF1-209ENST00000532725 TRBV5-5A0A0J9YX44 114 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 GPR37O15354 613 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 ENSAO43768 121 aaKnown RBP16.44■□□□□ 0.22
CPSF1-209ENST00000532725 PLATP00750 562 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 CD1AP06126 327 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 LIPFP07098 398 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 PPIAL4GP0DN37 164 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 CRHBPP24387 322 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 PRDX2P32119 198 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 ACSM1Q08AH1 577 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 PDZK1IP1Q13113 114 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 LRRC10Q5BKY1 277 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 MKXQ8IYA7 352 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 ST8SIA4Q92187 359 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 SLAMF9Q96A28 289 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 CEP19Q96LK0 163 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 SPACA5Q96QH8 159 aa16.44■□□□□ 0.22
CPSF1-209ENST00000532725 NKX6-3A6NJ46 265 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 SULT1B1O43704 296 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 INMTO95050 263 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 OCM2P0CE71 109 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 YIF1BQ5BJH7 314 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 KLF17Q5JT82 389 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-209ENST00000532725 ZNRF1Q8ND25 227 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 LY6G5BQ8NDX9 201 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 OR13C5Q8NGS8 318 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 TMEM106AQ96A25 262 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 MND1Q9BWT6 205 aa16.43■□□□□ 0.22
CPSF1-209ENST00000532725 RPUSD1Q9UJJ7 312 aaKnown RBP16.43■□□□□ 0.22
CPSF1-209ENST00000532725 LSM2Q9Y333 95 aaKnown RBP16.43■□□□□ 0.22
CPSF1-209ENST00000532725 SPRY1O43609 319 aaPredicted RBP16.42■□□□□ 0.22
CPSF1-209ENST00000532725 KNG1P01042 644 aa16.42■□□□□ 0.22
CPSF1-209ENST00000532725 CD2P06729 351 aa16.42■□□□□ 0.22
CPSF1-209ENST00000532725 OCMP0CE72 109 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms