RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TK1P04183 234 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 PIPP12273 146 aaPredicted RBP11.99□□□□□ -0.49
VPS28-215ENST00000531924 CCL3L1P16619 93 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 ATP6V1E1P36543 226 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 KIR2DS4P43632 304 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 ODF4Q2M2E3 257 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 HCP5Q6MZN7 132 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 LIAT1Q6ZQX7 453 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 PLEKHG7Q6ZR37 379 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 ANGPTL5Q86XS5 388 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 C1QL4Q86Z23 238 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 ZDHHC13Q8IUH4 622 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 TRMT10AQ8TBZ6 339 aaKnown RBP11.99□□□□□ -0.49
VPS28-215ENST00000531924 BCAS4Q8TDM0 211 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 NKX3-1Q99801 234 aaPredicted RBP11.99□□□□□ -0.49
VPS28-215ENST00000531924 NRIP2Q9BQI9 281 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 RANBP3Q9H6Z4 567 aaPredicted RBP11.99□□□□□ -0.49
VPS28-215ENST00000531924 ADGRL4Q9HBW9 690 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 ABCB10Q9NRK6 738 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 V9GYS6 101 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 CMYA5Q8N3K9 4069 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 DHRS7CA6NNS2 312 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 SYT7O43581 403 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 MITFO75030 526 aaPredicted RBP11.98□□□□□ -0.49
VPS28-215ENST00000531924 SERPINA3P01011 423 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 VSIG10L2P0DP72 767 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 PAX6P26367 422 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 BMXP51813 675 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 EDDM3BP56851 147 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 AADACL4Q5VUY2 407 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 SLX4IPQ5VYV7 408 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 TMEM42Q69YG0 159 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 ZNF782Q6ZMW2 699 aaPredicted RBP11.98□□□□□ -0.49
VPS28-215ENST00000531924 GDPD3Q7L5L3 318 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 CALHM1Q8IU99 346 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 C11orf44Q8N8P7 122 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 OR13D1Q8NGV5 346 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 OR14K1Q8NGZ2 314 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 PPP1R35Q8TAP8 253 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 UTP4Q969X6 686 aaKnown RBP11.98□□□□□ -0.49
VPS28-215ENST00000531924 TBX5Q99593 518 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 PKIBQ9C010 78 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 WARS2Q9UGM6 360 aaKnown RBP11.98□□□□□ -0.49
VPS28-215ENST00000531924 MRM2Q9UI43 246 aaKnown RBP11.98□□□□□ -0.49
VPS28-215ENST00000531924 SLC22A13Q9Y226 551 aa11.98□□□□□ -0.49
VPS28-215ENST00000531924 A0A1B0GTI1 187 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 H3BSH0 61 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 PEX14O75381 377 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 SRSF10O75494 262 aaKnown RBP11.97□□□□□ -0.49
VPS28-215ENST00000531924 GATBO75879 557 aaKnown RBP11.97□□□□□ -0.49
VPS28-215ENST00000531924 ARG1P05089 322 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 CHRM2P08172 466 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 MPZP25189 248 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 FASP25445 335 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 COL10A1Q03692 680 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 IL24Q13007 206 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 DYNC1I2Q13409 638 aaKnown RBP11.97□□□□□ -0.49
VPS28-215ENST00000531924 ATP6AP1Q15904 470 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 PLA1AQ53H76 456 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 KLHDC1Q8N7A1 406 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 OR10H4Q8NGA5 316 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 FOXRED1Q96CU9 486 aaPredicted RBP11.97□□□□□ -0.49
VPS28-215ENST00000531924 CEP19Q96LK0 163 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 FOXJ3Q9UPW0 622 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 WNK1Q9H4A3 2382 aa11.97□□□□□ -0.49
VPS28-215ENST00000531924 A0A0G2JK05 382 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 METTL15A6NJ78 407 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 ZAR1LA6NP61 321 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 H3BUI4 141 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 K7N7A8 449 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 INMTO95050 263 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 CYB5AP00167 134 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 OR2T7P0C7T2 308 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 ZNF728P0DKX0 622 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 FUT6P51993 359 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 EFNB2P52799 333 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 ZNF273Q14593 569 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 FAM189A2Q15884 450 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 ARSJQ5FYB0 599 aaPredicted RBP11.96□□□□□ -0.49
VPS28-215ENST00000531924 C12orf73Q69YU5 71 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 FAM220AQ7Z4H9 259 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 CCDC54Q8NEL0 328 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 SLC7A6OSQ96CW6 309 aaPredicted RBP11.96□□□□□ -0.49
VPS28-215ENST00000531924 HES4Q9HCC6 221 aa11.96□□□□□ -0.49
VPS28-215ENST00000531924 FCGR1AP12314 374 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 EPHA2P29317 976 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 RASSF2P50749 326 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 OR12D2P58182 307 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 EDDM3AQ14507 147 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 EGFL6Q8IUX8 553 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 RPS4Y2Q8TD47 263 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 RFKQ969G6 155 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 SLAMF9Q96A28 289 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 MALSU1Q96EH3 234 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 BORCS8Q96FH0 119 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 AJUBAQ96IF1 538 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 CADM1Q9BY67 442 aaKnown RBP11.95□□□□□ -0.5
VPS28-215ENST00000531924 PITPNC1Q9UKF7 332 aa11.95□□□□□ -0.5
VPS28-215ENST00000531924 TBL2Q9Y4P3 447 aaKnown RBP11.95□□□□□ -0.5
VPS28-215ENST00000531924 AP4S1Q9Y587 144 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms