RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PLCXD3Q63HM9 321 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 Q6ZR03 302 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 DTX2Q86UW9 622 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ANGPTL5Q86XS5 388 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 MKXQ8IYA7 352 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 SAXO1Q8IYX7 474 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 LINC00482Q8N8I6 264 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ZSCAN4Q8NAM6 433 aaPredicted RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 BHLHE23Q8NDY6 225 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR52N4Q8NGI2 321 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR51A2Q8NGJ7 313 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR13C9Q8NGT0 318 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR8S1Q8NH09 359 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ZNF671Q8TAW3 534 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ACOT12Q8WYK0 555 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 NEUROG1Q92886 237 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 BORCS8Q96FH0 119 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 RTL8AQ9BWD3 113 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR51I2Q9H344 312 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 METTL17Q9H7H0 456 aaPredicted RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 PLEKHF2Q9H8W4 249 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 RHOFQ9HBH0 211 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 GPR173Q9NS66 373 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ABRACLQ9P1F3 81 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 MYEF2Q9P2K5 600 aaKnown RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 A3GALT2U3KPV4 340 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ARFGEF3Q5TH69 2177 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 HIVEP1P15822 2718 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 DSCAMO60469 2012 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 A0A075B6Q4 140 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 A0A0G2JK05 382 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 FAM230AA0A1W2PPH8 454 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 A0A1W2PPW3 197 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 LRP5LA4QPB2 252 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 H0YL77 283 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 M0R233 179 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 AIPO00170 330 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 SLC17A2O00624 439 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 MLNRO43193 412 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 NOS1APO75052 506 aaPredicted RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 CD8AP01732 235 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 HCKP08631 526 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 CLEC2LP0C7M8 214 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 UBBP0CG47 229 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 CALCBP10092 127 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 TNFRSF1AP19438 455 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 HTR2CP28335 458 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 TGFBR1P36897 503 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 CD200P41217 278 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 SRP9P49458 86 aaKnown RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 PPOXP50336 477 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 MXD1Q05195 221 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 PDZK1IP1Q13113 114 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 MAB21L1Q13394 359 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 FAM189A2Q15884 450 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 C2orf76Q3KRA6 126 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 DDI2Q5TDH0 399 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 CRIP3Q6Q6R5 217 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 SPNS3Q6ZMD2 512 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 LINC00299Q6ZSB3 139 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 NR2C2APQ86WQ0 139 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 PNLDC1Q8NA58 520 aaKnown RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 Q8NFD4 153 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 PXT1Q8NFP0 134 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 OR2Z1Q8NG97 314 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 OR6M1Q8NGM8 313 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 NDNFQ8TB73 568 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 AP3S1Q92572 193 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 SLC25A28Q96A46 364 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 DACT3Q96B18 629 aaPredicted RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 MRPS24Q96EL2 167 aaKnown RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 CMTM3Q96MX0 182 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 GPER1Q99527 375 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 GFI1Q99684 422 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 BARHL1Q9BZE3 327 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 PKIBQ9C010 78 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 EGLN1Q9GZT9 426 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 NXF2Q9GZY0 626 aaKnown RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 TLNRD1Q9H1K6 362 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 MMP27Q9H306 513 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 PPP1R3EQ9H7J1 279 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 MSL2Q9HCI7 577 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 STEAP1Q9UHE8 339 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 RAI1Q7Z5J4 1906 aaPredicted RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 CHD3Q12873 2000 aaKnown RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 HRNRQ86YZ3 2850 aaPredicted RBP6.26□□□□□ -1.41
CD44-228ENST00000528455 DYSFO75923 2080 aa6.26□□□□□ -1.41
CD44-228ENST00000528455 ROS1P08922 2347 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 AKAP6Q13023 2319 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 IGKV1-27A0A075B6S5 117 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 A0A1W2PPR1 153 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 F5H5P2 479 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 IFNL4K9M1U5 179 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 OVOL3O00110 214 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ZNF780AO75290 641 aaPredicted RBP6.25□□□□□ -1.41
CD44-228ENST00000528455 CYB5AP00167 134 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 IGHV1-46P01743 117 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 ARSBP15848 533 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 MPZP25189 248 aa6.25□□□□□ -1.41
CD44-228ENST00000528455 THBS2P35442 1172 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms