RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SLC25A1P53007 311 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CRISP1P54107 249 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TMBIM6P55061 237 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RAG2P55895 527 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 ARPP19P56211 112 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RAB5BP61020 215 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CDK6Q00534 326 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 ACVR1Q04771 509 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TCP10Q12799 353 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 GK3PQ14409 553 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TRMT5Q32P41 509 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 SLC36A2Q495M3 483 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 PYCR3Q53H96 274 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 C2orf83Q53S99 150 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 GCSAMLQ5JQS6 135 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SPIN3Q5JUX0 258 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CTSL3PQ5NE16 218 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TIMM23BQ5SRD1 257 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 LGSNQ5TDP6 509 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR2G6Q5TZ20 316 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SAMD13Q5VXD3 122 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 NXNL2Q5VZ03 156 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 DMKNQ6E0U4 476 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 ASPHD2Q6ICH7 369 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 H3F3CQ6NXT2 135 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RNASEKQ6P5S7 137 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 TMEM179Q6ZVK1 233 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 FAM183BPQ6ZVS7 135 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SMIM5Q71RC9 77 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 Q7L0L9 218 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SSX7Q7RTT5 188 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TMEM126BQ8IUX1 230 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 LRRC75AQ8NAA5 344 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR4C5Q8NGB2 326 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR4K2Q8NGD2 314 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR9G4Q8NGQ1 327 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR51F2Q8NH61 342 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 OR5AK3PQ8NH89 298 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 PIH1D2Q8WWB5 315 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CRYGNQ8WXF5 182 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TFGQ92734 400 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 MAGOHBQ96A72 148 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 PINX1Q96BK5 328 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 MRPS24Q96EL2 167 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 COQ2Q96H96 371 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CELF6Q96J87 481 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 FCRL1Q96LA6 429 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TEX37Q96LM6 180 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 GUCD1Q96NT3 240 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SDHCQ99643 169 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 NKX6-2Q9C056 277 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 NAA50Q9GZZ1 169 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 TLNRD1Q9H1K6 362 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 PRO1933Q9H354 126 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 UBE2ZQ9H832 354 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 CXorf21Q9HAI6 301 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 ELL3Q9HB65 397 aaPredicted RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 SGK2Q9HBY8 427 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 USE1Q9NZ43 259 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 MED11Q9P086 117 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SEC14L4Q9UDX3 406 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 PCYOX1Q9UHG3 505 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 FBXO5Q9UKT4 447 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 ZFP30Q9Y2G7 519 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RNF115Q9Y4L5 304 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RFNGQ9Y644 331 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 ARL5AQ9Y689 179 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 NHSQ6T4R5 1651 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SSH2Q76I76 1423 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 NSD3Q9BZ95 1437 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 FLT4P35916 1363 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 NFASCO94856 1347 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 COL24A1Q17RW2 1714 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 QSER1Q2KHR3 1735 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 ATP7BP35670 1465 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 A0A087WXM4 84 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 A0A0G2JN53 185 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 PRORSD1PA6NEY8 169 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 OR5H14A6NHG9 310 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 G3V3Y1 287 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 H0Y980 276 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 H0Y9J4 135 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 CLDN34H7C241 214 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 AIPO00170 330 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 BTN3A3O00478 584 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 MSH4O15457 936 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 GYG2O15488 501 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 LATO43561 262 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 PRKAB2O43741 272 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 SC5DO75845 299 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 MMP23AO75900 390 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 GLSO94925 669 aaPredicted RBP2.74□□□□□ -1.97
CD44-217ENST00000525348 RCBTB2O95199 551 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 PDYNP01213 254 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 IFNA7P01567 189 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 JCHAINP01591 159 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 BPGMP07738 259 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 SFTPBP07988 381 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 OR10J4P0C629 311 aa2.74□□□□□ -1.97
CD44-217ENST00000525348 CPN1P15169 458 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms