RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LPAR3Q9UBY5 353 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 OR5V1Q9UGF6 321 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 ARHGAP32A7KAX9 2087 aa11.9□□□□□ -0.51
NUP54-216ENST00000514901 ZFHX3Q15911 3703 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 NAV3Q8IVL0 2385 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 TRBV5-7A0A0A0MS05 114 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 A0A0G2JMP0 313 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 A0A0X1KG70 313 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 NKX6-3A6NJ46 265 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 OR2AT4A6NND4 320 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 J3QLI3 93 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 GPR37O15354 613 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 TMPRSS2O15393 492 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 CPEP16870 476 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 PSMA1P25786 263 aaKnown RBP11.89□□□□□ -0.51
NUP54-216ENST00000514901 ZFP36P26651 326 aaKnown RBP11.89□□□□□ -0.51
NUP54-216ENST00000514901 MAP2K4P45985 399 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 GMFBP60983 142 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 ERVK11-1P61568 191 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 LCN2P80188 198 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 HOXA4Q00056 320 aaPredicted RBP11.89□□□□□ -0.51
NUP54-216ENST00000514901 KISS1Q15726 138 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 CD276Q5ZPR3 534 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 WDR25Q64LD2 544 aaPredicted RBP11.89□□□□□ -0.51
NUP54-216ENST00000514901 ZNF841Q6ZN19 808 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 ACP7Q6ZNF0 438 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 SAXO1Q8IYX7 474 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 TEX29Q8N6K0 151 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 OR4M2Q8NGB6 313 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 OR13C5Q8NGS8 318 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 ANGPTL6Q8NI99 470 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 CEP19Q96LK0 163 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 MGLLQ99685 303 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 HES4Q9HCC6 221 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 ACOT13Q9NPJ3 140 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 TAS2R4Q9NYW5 299 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 FOXJ3Q9UPW0 622 aa11.89□□□□□ -0.51
NUP54-216ENST00000514901 KIAA1324LA8MWY0 1029 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 INAFM1C9JVW0 142 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 TRAPPC2LH3BP13 241 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 PHF1O43189 567 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 ECDO95905 644 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 PSG2P11465 335 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 IGFBP3P17936 291 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 FSTP19883 344 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 HNF1AP20823 631 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 BDKRB2P30411 391 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 TGFBR2P37173 567 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 POU3F4P49335 361 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 SEC61A1P61619 476 aaKnown RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 EMX1Q04741 257 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 DOC2BQ14184 412 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 CR1LQ2VPA4 569 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 KCTD21Q4G0X4 260 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 ACSM3Q53FZ2 586 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 LRRC10Q5BKY1 277 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 DCAF12L2Q5VW00 463 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 LIPKQ5VXJ0 399 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 FIP1L1Q6UN15 594 aaKnown RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 UNQ9370/PRO34162Q6UXP9 181 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 ZNF788Q6ZQV5 615 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 OR5T2Q8NGG2 359 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 PHYHIPQ92561 330 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 FCGR1BQ92637 280 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 SEH1LQ96EE3 360 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 DERL3Q96Q80 235 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 OR14A2Q96R54 314 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 CCL13Q99616 98 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 SEBOXQ9HB31 216 aaPredicted RBP11.88□□□□□ -0.51
NUP54-216ENST00000514901 SNTG1Q9NSN8 517 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 MTCH1Q9NZJ7 389 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 CDC42EP3Q9UKI2 254 aa11.88□□□□□ -0.51
NUP54-216ENST00000514901 LOC105371242A0A075B767 164 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 MEGF11A6BM72 1044 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 NDUFB3O43676 98 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 PLATP00750 562 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 KNG1P01042 644 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 LIPFP07098 398 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 GABRA2P47869 451 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 BMXP51813 675 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 IL13RA1P78552 427 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 ASPHD2Q6ICH7 369 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 FAHD2BQ6P2I3 314 aaPredicted RBP11.87□□□□□ -0.51
NUP54-216ENST00000514901 ZNF773Q6PK81 442 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 BTNL3Q6UXE8 466 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 SATL1Q86VE3 508 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 CDH26Q8IXH8 852 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 SPARTQ8N0X7 666 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 PXT1Q8NFP0 134 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 RAB40AQ8WXH6 277 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 SLAMF9Q96A28 289 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 SDSLQ96GA7 329 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 FAHD2AQ96GK7 314 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 ZNF488Q96MN9 340 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 GPER1Q99527 375 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 TMED9Q9BVK6 235 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 SHARPINQ9H0F6 387 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 CTSZQ9UBR2 303 aa11.87□□□□□ -0.51
NUP54-216ENST00000514901 C2CD3Q4AC94 2353 aa11.86□□□□□ -0.51
NUP54-216ENST00000514901 IGKV1D-17A0A075B6S4 117 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms