RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 GLI4P10075 376 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 FCARP24071 287 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 FPR2P25090 351 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 CLN3Q13286 438 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 TRA2AQ13595 282 aaKnown RBP eCLIP11.69□□□□□ -0.549e-6■□□□□ 10.6
TCOF1-213ENST00000514442 PMS2P11Q13670 270 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 LTBP1Q14766 1721 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 CEACAM16Q2WEN9 425 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 CYB5R2Q6BCY4 276 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 ARRDC1Q8N5I2 433 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 REEP6Q96HR9 211 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 PLEKHA3Q9HB20 300 aa11.69□□□□□ -0.54
TCOF1-213ENST00000514442 SURF2Q15527 256 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF574Q6ZN55 896 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-213ENST00000514442 ZAR1Q86SH2 424 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM104Q8NE00 496 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 PITPNC1Q9UKF7 332 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 HSD17B6O14756 317 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 GPR37O15354 613 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SHBQ15464 509 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM52Q8NDY8 209 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 MOGAT1Q96PD6 335 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 BRWD1Q9NSI6 2320 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 OR13D1Q8NGV5 346 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 H1FXQ92522 213 aaKnown RBP11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SNX22Q96L94 193 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 VAMP8Q9BV40 100 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 ADAM19Q9H013 955 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 MOB1AQ9H8S9 216 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 DECR2Q9NUI1 292 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SCN3AQ9NY46 2000 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SLC22A20A6NK97 555 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 CDRT15L2A8MXV6 281 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 M0R296 226 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 CCKARP32238 428 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 PSMB3P49720 205 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 HIST1H3AP68431 136 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 PSG6Q00889 435 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 CD226Q15762 336 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 ACOT6Q3I5F7 207 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-213ENST00000514442 RHBDD2Q6NTF9 364 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SLC22A18ASQ8N1D0 253 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 OR4C5Q8NGB2 326 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 SARAFQ96BY9 339 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 LRP12Q9Y561 859 aa11.68□□□□□ -0.54
TCOF1-213ENST00000514442 IL2RAP01589 272 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 HABP2Q14520 560 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 NCR3LG1Q68D85 454 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 SUMF1Q8NBK3 374 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 DMBX1Q8NFW5 382 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 TSPAN32Q96QS1 320 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 SDCBPO00560 298 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 DEGS1O15121 323 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 ADRA2CP18825 462 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 FZD5Q13467 585 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 TOMM20LQ6UXN7 152 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 TET1Q8NFU7 2136 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 UCK1Q9HA47 277 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF107Q9UII5 783 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 BRCA1P38398 1863 aaKnown RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 ALG1L2C9J202 215 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 KLK10O43240 276 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 MMP7P09237 267 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 TMIGD3P0DMS9 266 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF133P52736 654 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 PTTG1IPP53801 180 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 PCK2Q16822 640 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM68Q96MH6 324 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 PROCRQ9UNN8 238 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 A0A1B0GTH9 108 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 RBFOX3A6NFN3 312 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 CYR61O00622 381 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 PRRG2O14669 202 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 NRASP01111 189 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 PDGFBP01127 241 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 NKX2-1P43699 371 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 SUMO1P63165 101 aaKnown RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 SPATA46Q5T0L3 261 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 OTOSQ8NHW6 89 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF2Q9BSG1 426 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 RYDENQ9NUL5 291 aaKnown RBP11.67□□□□□ -0.54
TCOF1-213ENST00000514442 NECAP2Q9NVZ3 263 aa11.67□□□□□ -0.54
TCOF1-213ENST00000514442 MDFIC2A0A1B0GVS7 189 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 ADAP1O75689 374 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 FAHP16930 419 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 SULT1A2P50226 295 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM33P57088 247 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TAS2R30P59541 319 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 DLK1P80370 383 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TESK1Q15569 626 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 HES3Q5TGS1 186 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TIPARPQ7Z3E1 657 aaKnown RBP11.66□□□□□ -0.54
TCOF1-213ENST00000514442 DTD1Q8TEA8 209 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 RDH5Q92781 318 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TECTBQ96PL2 329 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 CABIN1Q9Y6J0 2220 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 A0A1W2PPQ1 181 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 KCNAB3O43448 404 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 OPRM1P35372 400 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 CDKN2AP42771 156 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms