RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 FAM3AP98173 230 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 RNPS1Q15287 305 aaKnown RBP10.41□□□□□ -0.74
NUP54-202ENST00000502850 TRIP6Q15654 476 aaKnown RBP10.41□□□□□ -0.74
NUP54-202ENST00000502850 LRRC37A5PQ49AS3 106 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 NKAPLQ5M9Q1 402 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 C1QTNF12Q5T7M4 302 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 AADACL3Q5VUY0 350 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 SPINK14Q6IE38 97 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 CLEC18BQ6UXF7 455 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 SKA3Q8IX90 412 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 CCDC36Q8IYA8 594 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 TMEM230Q96A57 120 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 ZNF471Q9BX82 626 aaPredicted RBP10.41□□□□□ -0.74
NUP54-202ENST00000502850 NECAP2Q9NVZ3 263 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 RASL12Q9NYN1 266 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 FOXJ2Q9P0K8 574 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 MBD2Q9UBB5 411 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 ANXA10Q9UJ72 324 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 PCSK5Q92824 1860 aa10.41□□□□□ -0.74
NUP54-202ENST00000502850 C13orf42A0A1B0GVH6 325 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 RNF222A6NCQ9 220 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A10PA6NDY2 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A18PA6NE21 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A16PA6NEW6 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A20PA6NIJ5 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A8PA6NJQ4 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A7PA6NKC0 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A22PA8MWA6 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A12PA8MX19 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A5PA8MXJ8 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A23PA8MXZ1 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 RLN2P04090 185 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A15PP0C7V4 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A13PP0C7W8 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A14PP0C7W9 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 FAM90A24PP0C7X0 464 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 ZNF708P17019 499 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 NTF4P34130 210 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 RBMXP38159 391 aaKnown RBP10.4□□□□□ -0.74
NUP54-202ENST00000502850 CLDN18P56856 261 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 PLGLB1Q02325 96 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 HGFACQ04756 655 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 PLCXD3Q63HM9 321 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 RPUSD3Q6P087 351 aaKnown RBP10.4□□□□□ -0.74
NUP54-202ENST00000502850 RTN4RL2Q86UN3 420 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 SGPP2Q8IWX5 399 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 OSR2Q8N2R0 312 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 STOML3Q8TAV4 291 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 ADAMTS17Q8TE56 1095 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 DCUN1D4Q92564 292 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 ZNF845Q96IR2 970 aaPredicted RBP10.4□□□□□ -0.74
NUP54-202ENST00000502850 CMSS1Q9BQ75 279 aaKnown RBP10.4□□□□□ -0.74
NUP54-202ENST00000502850 RTBDNQ9BSG5 229 aaPredicted RBP10.4□□□□□ -0.74
NUP54-202ENST00000502850 REG4Q9BYZ8 158 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 TTTY12Q9BZ98 90 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 PRRG4Q9BZD6 226 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 EPG5Q9HCE0 2579 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 DOCK10Q96BY6 2186 aa10.4□□□□□ -0.74
NUP54-202ENST00000502850 TEX13DA0A0J9YY54 714 aaPredicted RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 C1QTNF9BB2RNN3 333 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 F5H0A9 414 aaPredicted RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 KLRC4-KLRK1H3BQV0 150 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 ACTL6AO96019 429 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 IFNA2P01563 188 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 C1QTNF9P0C862 333 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 LYL1P12980 280 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 TPT1P13693 172 aaKnown RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 CHATP28329 748 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 ARR3P36575 388 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 LUMP51884 338 aaPredicted RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 EIF5AP63241 154 aaKnown RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 NAAAQ02083 359 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 MALLQ13021 153 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 PABPC1L2AQ5JQF8 200 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 TSPO2Q5TGU0 170 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 SIGIRRQ6IA17 410 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 PRSS54Q6PEW0 395 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 UNQ6494/PRO21346Q6UXR6 183 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 COLCA1Q6ZS62 124 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 C6orf201Q7Z4U5 140 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 OR1S1Q8NH92 325 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 PCNPQ8WW12 178 aaKnown RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 CXorf58Q96LI9 332 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 C2orf50Q96LR7 162 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 METTL8Q9H825 291 aaKnown RBP10.4□□□□□ -0.75
NUP54-202ENST00000502850 DECR2Q9NUI1 292 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 DNAJB11Q9UBS4 358 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 GLS2Q9UI32 602 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 CSAG2Q9Y5P2 127 aa10.4□□□□□ -0.75
NUP54-202ENST00000502850 A8MXK9 166 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 FGF2P09038 288 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 SUPT4H1P63272 117 aaKnown RBP10.39□□□□□ -0.75
NUP54-202ENST00000502850 ZNF92Q03936 586 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 PDZK1IP1Q13113 114 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 SNTB1Q13884 538 aaKnown RBP10.39□□□□□ -0.75
NUP54-202ENST00000502850 SLC9A3R2Q15599 337 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 PAN3Q58A45 887 aaKnown RBP10.39□□□□□ -0.75
NUP54-202ENST00000502850 MOB3CQ70IA8 216 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 MCEMP1Q8IX19 187 aa10.39□□□□□ -0.75
NUP54-202ENST00000502850 SAXO1Q8IYX7 474 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms