RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 LYPD4Q6UWN0 246 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 ZNF782Q6ZMW2 699 aaPredicted RBP13.17□□□□□ -0.3
VIM-208ENST00000497849 SLC37A3Q8NCC5 494 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 ZNRF4Q8WWF5 429 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 MALSU1Q96EH3 234 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 RDH12Q96NR8 316 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 MBOAT4Q96T53 435 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 MICU1Q9BPX6 476 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 COPS4Q9BT78 406 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 PAPOLGQ9BWT3 736 aaKnown RBP13.17□□□□□ -0.3
VIM-208ENST00000497849 MED20Q9H944 212 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 SMPD3Q9NY59 655 aaPredicted RBP13.17□□□□□ -0.3
VIM-208ENST00000497849 TVP23BQ9NYZ1 205 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 LRP12Q9Y561 859 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 TVP23AA6NH52 213 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 ODF3BA8MYP8 253 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 DLGAP1O14490 977 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 TBX1O43435 398 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 IDH3BO43837 385 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 DCTDP32321 178 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 DYNLT3P51808 116 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 ESRRGP62508 458 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 CRMP1Q14194 572 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 FAM76BQ5HYJ3 339 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 DCXRQ7Z4W1 244 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 FOXRED1Q96CU9 486 aaPredicted RBP13.16□□□□□ -0.3
VIM-208ENST00000497849 SDSLQ96GA7 329 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 REEP6Q96HR9 211 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 ASCL2Q99929 193 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 Q9H521 79 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 SP140LQ9H930 580 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 SLC25A19Q9HC21 320 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 RAB26Q9ULW5 256 aa13.16□□□□□ -0.3
VIM-208ENST00000497849 TBL2Q9Y4P3 447 aaKnown RBP13.16□□□□□ -0.3
VIM-208ENST00000497849 FAM183AA6NL82 134 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 ZAR1LA6NP61 321 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 CLUP10909 449 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 GLRA1P23415 457 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 PYCR1P32322 319 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 GSK3AP49840 483 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 RPL31P62899 125 aaKnown RBP13.15□□□□□ -0.3
VIM-208ENST00000497849 DGCR2P98153 550 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 IL5RAQ01344 420 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 TIGD6Q17RP2 521 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 KHDC1LQ5JSQ8 128 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 SLX4IPQ5VYV7 408 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 OR4X2Q8NGF9 303 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 TFAP2CQ92754 450 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 OTULINQ96BN8 352 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 SLAMF6Q96DU3 332 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 RTL8AQ9BWD3 113 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 GABARAPL3Q9BY60 117 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 CENPMQ9NSP4 180 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 ZNF319Q9P2F9 582 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 BAIAP2Q9UQB8 552 aa13.15□□□□□ -0.3
VIM-208ENST00000497849 TMEM210A6NLX4 147 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 ANXA2P2A6NMY6 339 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 ARG1P05089 322 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 GYPBP06028 91 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 ZNF273Q14593 569 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 SNAPC1Q16533 368 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 PRSS45Q7RTY3 260 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 BCDIN3DQ7Z5W3 292 aaKnown RBP13.14□□□□□ -0.31
VIM-208ENST00000497849 DHRSXQ8N5I4 330 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 OR51L1Q8NGJ5 315 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 CYGBQ8WWM9 190 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 OR5P3Q8WZ94 311 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 MCRIP2Q9BUT9 160 aaKnown RBP13.14□□□□□ -0.31
VIM-208ENST00000497849 ADI1Q9BV57 179 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 CMC2Q9NRP2 79 aa13.14□□□□□ -0.31
VIM-208ENST00000497849 A0A1W2PPH5 198 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 RIIAD1A6NNX1 92 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 ZNF850A8MQ14 1090 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 FAM90A22PA8MWA6 464 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 PRKYO43930 277 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 HMGN1P05114 100 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 CAPGP40121 348 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 CX3CR1P49238 355 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 THBS3P49746 956 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 CAPZA1P52907 286 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 DLX6P56179 175 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 PRDX4Q13162 271 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 TAF13Q15543 124 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 ZNF626Q68DY1 528 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 C12orf73Q69YU5 71 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 PLBD1Q6P4A8 553 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 TCEANCQ8N8B7 351 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 ZNF555Q8NEP9 628 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 CSNK2A3Q8NEV1 391 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 OR4M1Q8NGD0 313 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 HPSE2Q8WWQ2 592 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 LYZL4Q96KX0 146 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 IL4I1Q96RQ9 567 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 AASSQ9UDR5 926 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 ENOPH1Q9UHY7 261 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 MPC1Q9Y5U8 109 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 COMMD3-BMI1R4GMX3 469 aa13.13□□□□□ -0.31
VIM-208ENST00000497849 hCG_1809904A0A1W2PP81 198 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 A0A1W2PPE2 198 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 A0A1W2PR64 198 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms