RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 SCN3BQ9NY72 215 aa13.22□□□□□ -0.29
LIME1-209ENST00000494776 SLC25A10Q9UBX3 287 aaPredicted RBP13.22□□□□□ -0.29
LIME1-209ENST00000494776 IGKV1D-17A0A075B6S4 117 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 IGKV1-27A0A075B6S5 117 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 IGKV1-9A0A0C4DH69 117 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 RFPL4AA6NLU0 287 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 PTGES3LE9PB15 166 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 RFPL4AL1F8VTS6 287 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 SIGLEC5O15389 551 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 TCF21O43680 179 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 ACAA1P09110 424 aaPredicted RBP13.21□□□□□ -0.29
LIME1-209ENST00000494776 NDUFB7P17568 137 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 AMY2BP19961 511 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 FPR2P25090 351 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 SOX2P48431 317 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 POU3F4P49335 361 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 C11orf91Q3C1V1 193 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 C6orf141Q5SZD1 244 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 XAF1Q6GPH4 301 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 IZUMO2Q6UXV1 221 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 SLC25A26Q70HW3 274 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 MKXQ8IYA7 352 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 BPIFB2Q8N4F0 458 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 TMEM185AQ8NFB2 350 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 GPR148Q8TDV2 347 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 ZNF418Q8TF45 676 aaPredicted RBP13.21□□□□□ -0.29
LIME1-209ENST00000494776 SLAMF9Q96A28 289 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 CEP19Q96LK0 163 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 NRIP2Q9BQI9 281 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 OR14J1Q9UGF5 321 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 NUP50Q9UKX7 468 aa13.21□□□□□ -0.29
LIME1-209ENST00000494776 ATRQ13535 2644 aa13.21□□□□□ -0.3
LIME1-209ENST00000494776 SVEP1Q4LDE5 3571 aa13.21□□□□□ -0.3
LIME1-209ENST00000494776 DNHD1Q96M86 4753 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 ZNF879B4DU55 563 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 SLC1A7O00341 560 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 OGG1O15527 345 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 RGS9O75916 674 aaPredicted RBP13.2□□□□□ -0.3
LIME1-209ENST00000494776 TOX4O94842 621 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 CD2P06729 351 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 HCKP08631 526 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 PPIAL4GP0DN37 164 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 SELLP14151 372 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 C21orf33P30042 268 aaPredicted RBP13.2□□□□□ -0.3
LIME1-209ENST00000494776 PRDX2P32119 198 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 FGF12P61328 243 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 RIPK1Q13546 671 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 DGUOKQ16854 277 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 METTL11BQ5VVY1 283 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 FGFRL1Q8N441 504 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 ZNRF1Q8ND25 227 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 C22orf15Q8WYQ4 148 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 MYDGFQ969H8 173 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 RFT1Q96AA3 541 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 DACT3Q96B18 629 aaPredicted RBP13.2□□□□□ -0.3
LIME1-209ENST00000494776 PCGF1Q9BSM1 259 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 CNTD2Q9H8S5 307 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 RPUSD1Q9UJJ7 312 aaKnown RBP13.2□□□□□ -0.3
LIME1-209ENST00000494776 ERGIC3Q9Y282 383 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 ZNF281Q9Y2X9 895 aa13.2□□□□□ -0.3
LIME1-209ENST00000494776 IGHV3OR16-10A0A075B7F0 116 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 MAGEB3O15480 346 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 SULT1B1O43704 296 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 FCN3O75636 299 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 MYF6P23409 242 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 TAS2R43P59537 309 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 ARF6P62330 175 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 FIP1L1Q6UN15 594 aaKnown RBP13.19□□□□□ -0.3
LIME1-209ENST00000494776 ZNF561Q8N587 486 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 PARP16Q8N5Y8 322 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 ZFP41Q8N8Y5 198 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 TMEM158Q8WZ71 300 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 EMG1Q92979 244 aaKnown RBP13.19□□□□□ -0.3
LIME1-209ENST00000494776 UPRTQ96BW1 309 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 SMIM19Q96E16 107 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 SPACA5Q96QH8 159 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 SUCNR1Q9BXA5 334 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 MS4A7Q9GZW8 240 aaPredicted RBP13.19□□□□□ -0.3
LIME1-209ENST00000494776 HES4Q9HCC6 221 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 MTCH1Q9NZJ7 389 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 ONECUT1Q9UBC0 465 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 SIRT4Q9Y6E7 314 aaPredicted RBP13.19□□□□□ -0.3
LIME1-209ENST00000494776 WNK2Q9Y3S1 2297 aa13.19□□□□□ -0.3
LIME1-209ENST00000494776 DOCK11Q5JSL3 2073 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 TRAV40A0A0B4J280 105 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 PNMA8CA0A1B0GUJ8 204 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 RNF212BA8MTL3 300 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 SPRY1O43609 319 aaPredicted RBP13.18□□□□□ -0.3
LIME1-209ENST00000494776 LALBAP00709 142 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 KNG1P01042 644 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 FSHBP01225 129 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 MT-ND2P03891 347 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 CDK1P06493 297 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 RAB3AP20336 220 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 CEBPDP49716 269 aaPredicted RBP13.18□□□□□ -0.3
LIME1-209ENST00000494776 CAV3P56539 151 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 WNT4P56705 351 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 ERVK11-1P61568 191 aa13.18□□□□□ -0.3
LIME1-209ENST00000494776 SRSF2Q01130 221 aaKnown RBP13.18□□□□□ -0.3
LIME1-209ENST00000494776 PDZK1IP1Q13113 114 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms