RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 MARVELD3Q96A59 401 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 BORCS8Q96FH0 119 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 POM121L2Q96KW2 1035 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CLEC4MQ9H2X3 399 aaPredicted RBP9.29□□□□□ -0.92
USP4-214ENST00000491791 FN3KRPQ9HA64 309 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 KCNN3Q9UGI6 736 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 TNRC6AQ8NDV7 1962 aaKnown RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 ARGFXA6NJG6 315 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 M0R233 179 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 GOSR2O14653 212 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 MPC2O95563 127 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 PATE4P0C8F1 98 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 TMEM225BP0DP42 221 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 HOXB1P14653 301 aaPredicted RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 CXCL2P19875 107 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 CHATP28329 748 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 CD34P28906 385 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 RFC3P40938 356 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 HTR2BP41595 481 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 ZNF81P51508 661 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 OPCMLQ14982 345 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 GUSBP1Q15486 140 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 TGIF1Q15583 401 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 NKPD1Q17RQ9 610 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 SCGB2B2Q4G0G5 96 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 RNFT1Q5M7Z0 435 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 DCAF12L2Q5VW00 463 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 FBXW9Q5XUX1 488 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 SIGIRRQ6IA17 410 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 RPUSD3Q6P087 351 aaKnown RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 Q6ZS49 121 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 CD163Q86VB7 1156 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 OR5AP2Q8NGF4 316 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 OR8H1Q8NGG4 311 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 OR5H2Q8NGV7 314 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 BCL2L2Q92843 193 aaPredicted RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 EMG1Q92979 244 aaKnown RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 GMPPAQ96IJ6 420 aaPredicted RBP9.28□□□□□ -0.92
USP4-214ENST00000491791 ZNF75AQ96N20 296 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 PHB2Q99623 299 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 PRRG4Q9BZD6 226 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 CHIAQ9BZP6 476 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 CALHM2Q9HA72 323 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 MED9Q9NWA0 146 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 SPRR3Q9UBC9 169 aa9.28□□□□□ -0.92
USP4-214ENST00000491791 PQLC2LA1A4F0 135 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 ANKRD34BA5PLL1 514 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 SLC22A20A6NK97 555 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 POM121CA8CG34 1229 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 L7N2F9 121 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 PMP2P02689 132 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 ZNF35P13682 527 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 AMY2BP19961 511 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 SERPINA2P20848 420 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 S100A11P31949 105 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 SNU13P55769 128 aaKnown RBP9.27□□□□□ -0.93
USP4-214ENST00000491791 ARG2P78540 354 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 SRYQ05066 204 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 MALLQ13021 153 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 PPP1R1AQ13522 171 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 ARFRP1Q13795 201 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 ZNF345Q14585 488 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 RSU1Q15404 277 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 AADACL3Q5VUY0 350 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 ZNF660Q6AZW8 331 aaPredicted RBP9.27□□□□□ -0.93
USP4-214ENST00000491791 LIN54Q6MZP7 749 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 DHRS11Q6UWP2 260 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 NUFIP2Q7Z417 695 aaKnown RBP9.27□□□□□ -0.93
USP4-214ENST00000491791 TMED4Q7Z7H5 227 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 RTN4RL2Q86UN3 420 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 MCEMP1Q8IX19 187 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 OR1K1Q8NGR3 316 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 C5orf66Q9H5L9 145 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 RHOFQ9HBH0 211 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 PLSCR2Q9NRY7 297 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 CLCF1Q9UBD9 225 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 MAB21L2Q9Y586 359 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 LIPGQ9Y5X9 500 aa9.27□□□□□ -0.93
USP4-214ENST00000491791 TLN1Q9Y490 2541 aaKnown RBP9.27□□□□□ -0.93
USP4-214ENST00000491791 TRBV6-7A0A0A0MS04 114 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 TRAV14DV4A0A0A6YYC5 116 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 IGKV1-12A0A0C4DH73 117 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 A0A0D9SG52 128 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 RPS10-NUDT3A0A1W2PQS6 291 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 OR5H14A6NHG9 310 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 AQP7O14520 342 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 B3GALNT1O75752 331 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 HTR3BO95264 441 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 SFT2D2O95562 160 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 IL18BPO95998 194 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 IGKV1D-12P01611 117 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 HLA-AP01891 365 aaKnown RBP9.26□□□□□ -0.93
USP4-214ENST00000491791 CSTBP04080 98 aaKnown RBP9.26□□□□□ -0.93
USP4-214ENST00000491791 RAB1AP62820 205 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 IL13RA1P78552 427 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 CYCSP99999 105 aaKnown RBP9.26□□□□□ -0.93
USP4-214ENST00000491791 CEACAM21Q3KPI0 293 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 TMEM211Q6ICI0 200 aa9.26□□□□□ -0.93
USP4-214ENST00000491791 IGFL3Q6UXB1 125 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms