RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NUDT16L1Q9BRJ7 211 aaKnown RBP13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 MRI1Q9BV20 369 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 RASSF4Q9H2L5 321 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 Q9H521 79 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 DUSP21Q9H596 190 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 C7orf69Q9H7B7 122 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 DUX4Q9UBX2 424 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 PCDHGB5Q9Y5G0 923 aa13.53□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 IGKV1D-17A0A075B6S4 117 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PNMA8CA0A1B0GUJ8 204 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 C22orf46C9J442 243 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RGS10O43665 173 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 NDUFB3O43676 98 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FCN3O75636 299 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ALX3O95076 343 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 AVPP01185 164 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TFF1P04155 84 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PSG2P11465 335 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GABRA2P47869 451 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 POU3F4P49335 361 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ERVK11-1P61568 191 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IL13RA1P78552 427 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 BDH1Q02338 343 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IKZF1Q13422 519 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DOC2BQ14184 412 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 YIF1BQ5BJH7 314 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CD276Q5ZPR3 534 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNF788Q6ZQV5 615 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 C1orf229Q6ZS94 237 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR13C5Q8NGS8 318 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RAB40AQ8WXH6 277 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ST8SIA4Q92187 359 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TMEM106AQ96A25 262 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SLAMF9Q96A28 289 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DACT3Q96B18 629 aaPredicted RBP13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MED30Q96HR3 178 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CEP19Q96LK0 163 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GAFA1Q96PS6 74 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 HES4Q9HCC6 221 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OPN4Q9UHM6 478 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNF222Q9UK12 451 aa13.52□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SONP18583 2426 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TRBV5-5A0A0J9YX44 114 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SIGLEC5O15389 551 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ENSAO43768 121 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CYB5AP00167 134 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CD1AP06126 327 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 HCKP08631 526 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SELLP14151 372 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CELP19835 753 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ACSM1Q08AH1 577 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IRF3Q14653 427 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 LRRC10Q5BKY1 277 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 C1QL2Q7Z5L3 287 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MKXQ8IYA7 352 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RFT1Q96AA3 541 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SPACA5Q96QH8 159 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 TAS2R4Q9NYW5 299 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MTCH1Q9NZJ7 389 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 BLOC1S6Q9UL45 172 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 LSM2Q9Y333 95 aaKnown RBP13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 AUP1Q9Y679 476 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 NF1P21359 2839 aa13.51□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 KIR2DS1A0A191URI9 304 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RFPL4AA6NLU0 287 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RFPL4AL1F8VTS6 287 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ECDO95905 644 aaPredicted RBP13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RAB3AP20336 220 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PAX8Q06710 450 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PDZK1IP1Q13113 114 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SPHARQ15513 63 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 C11orf91Q3C1V1 193 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 Q499Y3 187 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZNF529Q6P280 563 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 BTN2A1Q7KYR7 527 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PRSS48Q7RTY5 328 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PRIMA1Q86XR5 153 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 Q8IYB0 196 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 FGFRL1Q8N441 504 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR5M11Q96RB7 305 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 CCDC90BQ9GZT6 254 aa13.5□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ARHGAP32A7KAX9 2087 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ZFHX3Q15911 3703 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 GPR37O15354 613 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MAGEB3O15480 346 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DENRO43583 198 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 SPRY1O43609 319 aaPredicted RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RRP9O43818 475 aaKnown RBP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 INMTO95050 263 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 KNG1P01042 644 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 IFNA2P01563 188 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ADRA2CP18825 462 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RPS11P62280 158 aaKnown RBP eCLIP13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 PPP3R1P63098 170 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 MED22Q15528 200 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 DGUOKQ16854 277 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 ASPHD2Q6ICH7 369 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 RNF144BQ7Z419 303 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR51A2Q8NGJ7 313 aa13.49□□□□□ -0.25
MSH5-SAPCD1-206ENST00000491552 OR5D18Q8NGL1 313 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms