RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 LGALS14Q8TCE9 139 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ING5Q8WYH8 240 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 OR5P2Q8WZ92 322 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CDKL2Q92772 493 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CIDECQ96AQ7 238 aaPredicted RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 MSANTD3Q96H12 275 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 GLT1D1Q96MS3 346 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 Q96MT0 163 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ALS2CR12Q96Q35 445 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 TSNAXQ99598 290 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 NAPGQ99747 312 aaPredicted RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 RHOXF2Q9BQY4 288 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 MARVELD1Q9BSK0 173 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SYT4Q9H2B2 425 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 DHX35Q9H5Z1 703 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ACOT13Q9NPJ3 140 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 DHCR7Q9UBM7 475 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 MRM2Q9UI43 246 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ENPP5Q9UJA9 477 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 TFR2Q9UP52 801 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ORC6Q9Y5N6 252 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CACNA1DQ01668 2161 aa1.15□□□□□ -2.22
CPSF3-205ENST00000489629 SHANK1Q9Y566 2161 aa1.15□□□□□ -2.22
CPSF3-205ENST00000489629 LOC102724200A0A096LPH7 203 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SLC5A10A0PJK1 596 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 A8MWL6 223 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 M0QX08 132 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MYL12BO14950 172 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 NDUFS5O43920 106 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR7C2O60412 319 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SHOX2O60902 331 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 NDUFS6O75380 124 aaKnown RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CST4P01036 141 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 NPPAP01160 153 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CD8AP01732 235 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MMP7P09237 267 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR5AL1P0C617 328 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CCNOP22674 350 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 PRSS3P35030 304 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MPV17P39210 176 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 IDH2P48735 452 aaKnown RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 GDI2P50395 445 aaKnown RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MTPNP58546 118 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 UBE2KP61086 200 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 RBX1P62877 108 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 GRB2P62993 217 aaKnown RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 XRCC4Q13426 336 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 FAM53BQ14153 422 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 LINC00303Q3SY05 128 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SPIN3Q5JUX0 258 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CASP12Q6UXS9 341 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 Q6ZT83 130 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 TMEM25Q86YD3 366 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 ST13P4Q8IZP2 240 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 ORMDL3Q8N138 153 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CA13Q8N1Q1 262 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 TCAIMQ8N3R3 496 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SPERTQ8NA61 448 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR4K2Q8NGD2 314 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR5M1Q8NGP8 315 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR10Z1Q8NGY1 313 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR6N2Q8NGY6 317 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR8K3Q8NH51 312 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR52N1Q8NH53 320 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR1S1Q8NH92 325 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 OR2AE1Q8NHA4 323 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 ZNF420Q8TAQ5 688 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SFXN5Q8TD22 340 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SNF8Q96H20 258 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 CFAP53Q96M91 514 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 GPR82Q96P67 336 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SPACA5Q96QH8 159 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 PDCD1LG2Q9BQ51 273 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SHCBP1LQ9BZQ2 653 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 STMN4Q9H169 189 aaPredicted RBP1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SLC38A1Q9H2H9 487 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MAT2BQ9NZL9 334 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 RBM12B-AS1Q9P1G2 102 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 MMACHCQ9Y4U1 282 aa1.15□□□□□ -2.23
CPSF3-205ENST00000489629 SEC16AO15027 2179 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 AQRO60306 1485 aaKnown RBP eCLIP1.14□□□□□ -2.23
CPSF3-205ENST00000489629 GOLGA8QA0A0J9YX86 632 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 TMEM72A0PK05 275 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 ISPDA4D126 451 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 RAB19A4D1S5 217 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 VGLL3A8MV65 326 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 ZNF879B4DU55 563 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 PRAMEF26H0Y7S4 382 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.14□□□□□ -2.23
CPSF3-205ENST00000489629 H7C2Y5 167 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 hCG_2039718K7EN88 272 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 K7ERQ8 282 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 UPK1AO00322 258 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 MFNGO00587 321 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 ZMPSTE24O75844 475 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 SCO1O75880 301 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 MAS1P04201 325 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 IGKV5-2P06315 115 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 GP1BAP07359 652 aa1.14□□□□□ -2.23
CPSF3-205ENST00000489629 P0C880 135 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms