RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 HOXA6P31267 233 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 PJVKQ0ZLH3 352 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RAB35Q15286 201 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 GGNBP1Q5YKI7 109 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RTL6Q6ICC9 239 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 H3F3CQ6NXT2 135 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 OR2Y1Q8NGV0 311 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 FNDC9Q8TBE3 224 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 CMSS1Q9BQ75 279 aaKnown RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 SULT4A1Q9BR01 284 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 SMIM3Q9BZL3 60 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 CRYM-AS1A6NIL9 109 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RRP8O43159 456 aaKnown RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 RFPL3SP0C7P2 107 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 GLI4P10075 376 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RPL12P30050 165 aaKnown RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 PIGPP57054 158 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 B3GALT5-AS1P59052 145 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RAC3P60763 192 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 RPS18P62269 152 aaKnown RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 PIGYQ3MUY2 71 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 HAGHLQ6PII5 290 aaPredicted RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 FGFBP3Q8TAT2 258 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 NTNG2Q96CW9 530 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 UQCC1Q9NVA1 299 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 COLQQ9Y215 455 aaPredicted RBP15.61■□□□□ 0.09
VIM-206ENST00000487938 GEMIN2O14893 280 aaKnown RBP15.6■□□□□ 0.09
VIM-206ENST00000487938 AGPAT2O15120 278 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 CXCL13O43927 109 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 LPAR6P43657 344 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 FXYD4P59646 89 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 BATF2Q8N1L9 274 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 GPR137CQ8N3F9 429 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 SPSB1Q96BD6 273 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 BORCS8Q96FH0 119 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 RHOFQ9HBH0 211 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 TMEM38BQ9NVV0 291 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 PLA2G2EQ9NZK7 142 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 IGKV1-12A0A0C4DH73 117 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 K7EPK0 472 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 MED6O75586 246 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 IGKV1D-12P01611 117 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 HTR5AP47898 357 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 ID4P47928 161 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 RBP2P50120 134 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 TSPO2Q5TGU0 170 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 AAED1Q7RTV5 226 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 FAM71E2Q8N5Q1 922 aa15.6■□□□□ 0.09
VIM-206ENST00000487938 MARS2Q96GW9 593 aaKnown RBP15.6■□□□□ 0.09
VIM-206ENST00000487938 KIAA1549Q9HCM3 1950 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 GJE1A6NN92 205 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 TRAPPC6AO75865 159 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 F10P00742 488 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 NRASP01111 189 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 IFNA21P01568 189 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 CST2P09228 141 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 MUC1P15941 1255 aaPredicted RBP15.59■□□□□ 0.09
VIM-206ENST00000487938 FCGR2CP31995 323 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 FOLR3P41439 243 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 NPBWR1P48145 328 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 RGS19P49795 217 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 PSG4Q00888 419 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 C10orf91Q5T1B1 145 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 CCDC54Q8NEL0 328 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 OR5T2Q8NGG2 359 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 SMIM8Q96KF7 97 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 SF3B5Q9BWJ5 86 aaKnown RBP15.59■□□□□ 0.09
VIM-206ENST00000487938 NCKAP5O14513 1909 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 DEDDO75618 318 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 FARS2O95363 451 aaKnown RBP15.59■□□□□ 0.09
VIM-206ENST00000487938 P04436 131 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 FCGR3AP08637 254 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 ECI1P42126 302 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 CNN3Q15417 329 aaKnown RBP15.59■□□□□ 0.09
VIM-206ENST00000487938 WIPI1Q5MNZ9 446 aaPredicted RBP15.59■□□□□ 0.09
VIM-206ENST00000487938 IL34Q6ZMJ4 242 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 GGNQ86UU5 652 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 NECAP2Q9NVZ3 263 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 EDARQ9UNE0 448 aa15.59■□□□□ 0.09
VIM-206ENST00000487938 ZNF716A6NP11 495 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 NUDT19A8MXV4 375 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 NTN3O00634 580 aaPredicted RBP15.58■□□□□ 0.08
VIM-206ENST00000487938 TAAR5O14804 337 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 ZNHIT1O43257 154 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 ZNF728P0DKX0 622 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 CHATP28329 748 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 OTX2P32243 289 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 TMEM33P57088 247 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 SMCO1Q147U7 214 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 WDR5BQ86VZ2 330 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 OR10AD1Q8NGE0 317 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 PRRX2Q99811 253 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 PARP12Q9H0J9 701 aaKnown RBP15.58■□□□□ 0.08
VIM-206ENST00000487938 PRDM6Q9NQX0 595 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 FBXL17Q9UF56 701 aa15.58■□□□□ 0.08
VIM-206ENST00000487938 CARHSP1Q9Y2V2 147 aaKnown RBP15.58■□□□□ 0.08
VIM-206ENST00000487938 OR5AC1P0C628 307 aa15.57■□□□□ 0.08
VIM-206ENST00000487938 ZNF92Q03936 586 aa15.57■□□□□ 0.08
VIM-206ENST00000487938 ZFP36L1Q07352 338 aaKnown RBP15.57■□□□□ 0.08
VIM-206ENST00000487938 Q0VFX4 171 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms