RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 CAV3P56539 151 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 RPS11P62280 158 aaKnown RBP eCLIP4.72□□□□□ -1.65
CUX1-208ENST00000485792 ACTA2P62736 377 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ACTG2P63267 376 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 LCN2P80188 198 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 IL24Q13007 206 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 MRPL28Q13084 256 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 ALKBH1Q13686 389 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 KCNJ8Q15842 424 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 MICBQ29980 383 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 GFOD2Q3B7J2 385 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 CCDC58Q4VC31 144 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 TP53I3Q53FA7 332 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 BCL2L15Q5TBC7 163 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 TMEM244Q5VVB8 128 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 METAP1DQ6UB28 335 aaPredicted RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 ASCL4Q6XD76 172 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 C1orf122Q6ZSJ8 110 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 LYPD6Q86Y78 171 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 CALHM1Q8IU99 346 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 RDH10Q8IZV5 341 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 BATF2Q8N1L9 274 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 DHRSXQ8N5I4 330 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 C11orf42Q8N5U0 333 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 TEX29Q8N6K0 151 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 YIPF7Q8N8F6 280 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 POC1AQ8NBT0 407 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 OR10H4Q8NGA5 316 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 OR11L1Q8NGX0 322 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 OR8S1Q8NH09 359 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 LRRC29Q8WV35 223 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ZFAND2BQ8WV99 257 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 CYGBQ8WWM9 190 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 PP6455Q8WZ26 134 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 PIGCQ92535 297 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 GGHQ92820 318 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 RPL3LQ92901 407 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 STMN2Q93045 179 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ADAT3Q96EY9 351 aaPredicted RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 RNF170Q96K19 258 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ZNF488Q96MN9 340 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 TECTBQ96PL2 329 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 MICU1Q9BPX6 476 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 NRIP2Q9BQI9 281 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ADI1Q9BV57 179 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 PAPOLGQ9BWT3 736 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 SSBP3Q9BWW4 388 aaPredicted RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 PKIBQ9C010 78 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 SIRPDQ9H106 197 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ELL3Q9HB65 397 aaPredicted RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 AMBNQ9NP70 447 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 CNOT2Q9NZN8 540 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 PFDN2Q9UHV9 154 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 ENPP5Q9UJA9 477 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 IKZF2Q9UKS7 526 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 DIMT1Q9UNQ2 313 aaKnown RBP4.72□□□□□ -1.65
CUX1-208ENST00000485792 PIGLQ9Y2B2 252 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 MAB21L2Q9Y586 359 aa4.72□□□□□ -1.65
CUX1-208ENST00000485792 PRKDCP78527 4128 aaKnown RBP4.71□□□□□ -1.65
CUX1-208ENST00000485792 IGKV1-12A0A0C4DH73 117 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 LOC107986453A0A1B0GWG9 222 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 DAPL1A0PJW8 107 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ANKRD61A6NGH8 418 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ZNF732B4DXR9 585 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 J3QT63 122 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 DVL1O14640 695 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 SYNGR1O43759 233 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ZNF737O75373 536 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 RPP14O95059 124 aaKnown RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 VENTXO95231 258 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 BAG2O95816 211 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ECDO95905 644 aaPredicted RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 IFNA2P01563 188 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 IGKV1D-12P01611 117 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 HTR1AP08908 422 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 IRF2P14316 349 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 RPS2P15880 293 aaKnown RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 HNF1AP20823 631 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 GNALP38405 381 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 PITPNBP48739 271 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 CEBPDP49716 269 aaPredicted RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 ETV1P50549 477 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 FUT6P51993 359 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 BPIFB3P59826 476 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 SLC34A1Q06495 639 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ACSM1Q08AH1 577 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 LRRC36Q1X8D7 754 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ESCO2Q56NI9 601 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 CEP78Q5JTW2 689 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 LDLRAD2Q5SZI1 272 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 DCAF12L2Q5VW00 463 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 CD276Q5ZPR3 534 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 DMKNQ6E0U4 476 aaPredicted RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 SFRP4Q6FHJ7 346 aaPredicted RBP4.71□□□□□ -1.66
CUX1-208ENST00000485792 HCP5Q6MZN7 132 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ACP7Q6ZNF0 438 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 RTN4RL2Q86UN3 420 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 LHFPL3Q86UP9 236 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 ZNF573Q86YE8 665 aa4.71□□□□□ -1.66
CUX1-208ENST00000485792 PHC2Q8IXK0 858 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms