RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 YIPF7Q8N8F6 280 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 OR2T27Q8NH04 317 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 MNTQ99583 582 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 POLDIP2Q9Y2S7 368 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 SNX5Q9Y5X3 404 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 MEX3AA1L020 520 aaKnown RBP17.54■□□□□ 0.4
USP40-215ENST00000484528 DLGAP1O14490 977 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 DYNC1I1O14576 645 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 BMXP51813 675 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 ZNF273Q14593 569 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 LRRC75BQ2VPJ9 315 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 HIST2H2BDQ6DRA6 164 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 ZNF782Q6ZMW2 699 aaPredicted RBP17.54■□□□□ 0.4
USP40-215ENST00000484528 GID4Q8IVV7 300 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 PPP1R35Q8TAP8 253 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 CIB1Q99828 191 aa17.54■□□□□ 0.4
USP40-215ENST00000484528 FAM230AA0A1W2PPH8 454 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 NOS1APO75052 506 aaPredicted RBP17.53■□□□□ 0.4
USP40-215ENST00000484528 INMTO95050 263 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 KRT8P05787 483 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 FASP25445 335 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 GABRA5P31644 462 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 ZDHHC13Q8IUH4 622 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 C11orf42Q8N5U0 333 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 FAM110DQ8TAY7 271 aaPredicted RBP17.53■□□□□ 0.4
USP40-215ENST00000484528 GABARAPL1Q9H0R8 117 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 PLEKHA1Q9HB21 404 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 USE1Q9NZ43 259 aa17.53■□□□□ 0.4
USP40-215ENST00000484528 TK1P04183 234 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 MPZP25189 248 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 POLR2IP36954 125 aaKnown RBP17.52■□□□□ 0.4
USP40-215ENST00000484528 BNIP1Q12981 228 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 ASCC1Q8N9N2 400 aaKnown RBP17.52■□□□□ 0.4
USP40-215ENST00000484528 HEXA-AS1Q9H8Q6 139 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 HES4Q9HCC6 221 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.52■□□□□ 0.4
USP40-215ENST00000484528 AP4S1Q9Y587 144 aa17.52■□□□□ 0.4
USP40-215ENST00000484528 A0A1W2PPH5 198 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 A0A1W2PQL4 384 aaPredicted RBP17.51■□□□□ 0.39
USP40-215ENST00000484528 F8VVB4 439 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 F8VWA3 439 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 CCL1P22362 96 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 COL10A1Q03692 680 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 PLA1AQ53H76 456 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 C1orf146Q5VVC0 180 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 Q6ZSR3 168 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 CATSPERDQ86XM0 798 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 C1QL4Q86Z23 238 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 OR10H4Q8NGA5 316 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 FAM234AQ9H0X4 552 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 RIBC2Q9H4K1 309 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 FBLN5Q9UBX5 448 aa17.51■□□□□ 0.39
USP40-215ENST00000484528 WARS2Q9UGM6 360 aaKnown RBP17.51■□□□□ 0.39
USP40-215ENST00000484528 DHRS7CA6NNS2 312 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 SYT7O43581 403 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 ERVK11-1P61568 191 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 LHFPL4Q7Z7J7 247 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 C11orf44Q8N8P7 122 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 OR4C13Q8NGP0 309 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 SLAMF9Q96A28 289 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 PKIBQ9C010 78 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 MEGF9Q9H1U4 602 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 FAM53CQ9NYF3 392 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 SLC7A11Q9UPY5 501 aa17.5■□□□□ 0.39
USP40-215ENST00000484528 IGKV1-27A0A075B6S5 117 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 METTL15A6NJ78 407 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 CHST1O43916 411 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 HTR1FP30939 366 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 LGALS4P56470 323 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 IL24Q13007 206 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 UBE2V2Q15819 145 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 C2orf68Q2NKX9 166 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 MTCH1Q9NZJ7 389 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 ENOPH1Q9UHY7 261 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 FOXJ3Q9UPW0 622 aa17.49■□□□□ 0.39
USP40-215ENST00000484528 PRKDCP78527 4128 aaKnown RBP17.48■□□□□ 0.39
USP40-215ENST00000484528 hCG_1809904A0A1W2PP81 198 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 A0A1W2PPE2 198 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 A0A1W2PR64 198 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 A0A1W2PRV1 198 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 SAC3D1A6NKF1 404 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 OR2T7P0C7T2 308 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 ATP6V1E1P36543 226 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 EFNB2P52799 333 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 DLX6P56179 175 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 EDDM3BP56851 147 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 TP53I3Q53FA7 332 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 CRIP3Q6Q6R5 217 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 DYNAPQ8N1N2 210 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 PRSS35Q8N3Z0 413 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 CEP19Q96LK0 163 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 NKX3-1Q99801 234 aaPredicted RBP17.48■□□□□ 0.39
USP40-215ENST00000484528 OAZ3Q9UMX2 235 aa17.48■□□□□ 0.39
USP40-215ENST00000484528 KIAA2026Q5HYC2 2103 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 LOC107986453A0A1B0GWG9 222 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 MEGF11A6BM72 1044 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 K7N7A8 449 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 CSF1P09603 554 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 FCGR1AP12314 374 aa17.47■□□□□ 0.39
USP40-215ENST00000484528 Q6ZTK2 550 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms