RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PITPNBP48739 271 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 CLDN12P56749 244 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 FGF12P61328 243 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 ERVK11-1P61568 191 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 RPS27AP62979 156 aaKnown RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 MRPS11P82912 194 aaKnown RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 IL13RA2Q14627 380 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 MPV17LQ2QL34 196 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 MST1LQ2TV78 715 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 SLC22A6Q4U2R8 563 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 SPIN3Q5JUX0 258 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 PYHIN1Q6K0P9 492 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 HAGHLQ6PII5 290 aaPredicted RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 CALHM1Q8IU99 346 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 C1orf87Q8N0U7 546 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OSR2Q8N2R0 312 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 FAM89BQ8N5H3 189 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 GDPD1Q8N9F7 314 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 POC1AQ8NBT0 407 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OR10AD1Q8NGE0 317 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OR51T1Q8NGJ9 327 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OR5H6Q8NGV6 325 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OR11L1Q8NGX0 322 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 NEU4Q8WWR8 484 aaPredicted RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 RFT1Q96AA3 541 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 SLC25A38Q96DW6 304 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 C14orf79Q96F83 325 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 OR2V2Q96R30 315 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 SOSTQ9BQB4 213 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 NRIP2Q9BQI9 281 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 CCDC32Q9BV29 185 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 FGF23Q9GZV9 251 aaPredicted RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 RAB1BQ9H0U4 201 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 MIXL1Q9H2W2 232 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 ELL3Q9HB65 397 aaPredicted RBP8.62□□□□□ -1.03
USP39-215ENST00000481409 SPACA1Q9HBV2 294 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 PALMDQ9NP74 551 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 AKIP1Q9NQ31 210 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 DECR2Q9NUI1 292 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 GLS2Q9UI32 602 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 NPTNQ9Y639 398 aa8.62□□□□□ -1.03
USP39-215ENST00000481409 DOPEY1Q5JWR5 2465 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 SPTBN1Q01082 2364 aaKnown RBP8.61□□□□□ -1.03
USP39-215ENST00000481409 LRRC30A6NM36 301 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 POM121CA8CG34 1229 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 SULT1C2O00338 296 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 SPRY1O43609 319 aaPredicted RBP8.61□□□□□ -1.03
USP39-215ENST00000481409 SPRY3O43610 288 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 CRTAPO75718 401 aaPredicted RBP8.61□□□□□ -1.03
USP39-215ENST00000481409 PLAUP00749 431 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 GRPP07492 148 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 DANCRP0C864 163 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 PGA5P0DJD9 388 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 MGMTP16455 207 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 PPP5CP53041 499 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 UNC119Q13432 240 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 HACD4Q5VWC8 232 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 SP5Q6BEB4 398 aaPredicted RBP8.61□□□□□ -1.03
USP39-215ENST00000481409 CNIH2Q6PI25 160 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 WDR86Q86TI4 376 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 CMTM4Q8IZR5 234 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 OR5D18Q8NGL1 313 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 Q96M66 194 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 GAL3ST1Q99999 423 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 ATG5Q9H1Y0 275 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 PPP1R3EQ9H7J1 279 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 IFT22Q9H7X7 185 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 SAP30LQ9HAJ7 183 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 HES4Q9HCC6 221 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP39-215ENST00000481409 MTCH1Q9NZJ7 389 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 EXTL2Q9UBQ6 330 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 HSF4Q9ULV5 492 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 EDARQ9UNE0 448 aa8.61□□□□□ -1.03
USP39-215ENST00000481409 A0A0B4J203 849 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 IGKV1-12A0A0C4DH73 117 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 A6NLC8 198 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 SERPINE3A8MV23 424 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 SRRM5B3KS81 715 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 H7C417 338 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 CDIPTO14735 213 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 CA11O75493 328 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 HTR3BO95264 441 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 MPIG6BO95866 241 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 IGKV1D-12P01611 117 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 EIF4EP06730 217 aaKnown RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 GSTP1P09211 210 aaKnown RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 RNF224P0DH78 156 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 IRF2P14316 349 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 SERPINA2P20848 420 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 RBM11P57052 281 aaKnown RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 SSBP1Q04837 148 aaKnown RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 ZNF146Q15072 292 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 SMIM21Q3B7S5 101 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 TMEM69Q5SWH9 247 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 C11orf71Q6IPW1 123 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 FAM131AQ6UXB0 335 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 WDR82Q6UXN9 313 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 C1QL2Q7Z5L3 287 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 C11orf53Q8IXP5 236 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms