RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 CPNE2Q96FN4 548 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-217ENST00000479161 OPALINQ96PE5 141 aa12.85□□□□□ -0.35
C9orf3-217ENST00000479161 MRI1Q9BV20 369 aa12.85□□□□□ -0.35
C9orf3-217ENST00000479161 ZNF222Q9UK12 451 aa12.85□□□□□ -0.35
C9orf3-217ENST00000479161 DHDHQ9UQ10 334 aa12.85□□□□□ -0.35
C9orf3-217ENST00000479161 IGKV1-27A0A075B6S5 117 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 A0A0A6YYJ9 748 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 NKX6-3A6NJ46 265 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 DVL1O14640 695 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 MYL12BO14950 172 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 NDUFB3O43676 98 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 SULT1B1O43704 296 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 SYNGR1O43759 233 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 GPX5O75715 221 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 LALBAP00709 142 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 KNG1P01042 644 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 AVPP01185 164 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 ALDOBP05062 364 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 PSG2P11465 335 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 ADRA2CP18825 462 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 AZGP1P25311 298 aaKnown RBP12.84□□□□□ -0.35
C9orf3-217ENST00000479161 MTCP1P56278 107 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 BPIFB3P59826 476 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 IL13RA1P78552 427 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 HOXA4Q00056 320 aaPredicted RBP12.84□□□□□ -0.35
C9orf3-217ENST00000479161 GPR50Q13585 617 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 TUSC1Q2TAM9 212 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 LRRC10Q5BKY1 277 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 PRIMA1Q86XR5 153 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 PNLDC1Q8NA58 520 aaKnown RBP12.84□□□□□ -0.35
C9orf3-217ENST00000479161 ZSCAN4Q8NAM6 433 aaPredicted RBP12.84□□□□□ -0.35
C9orf3-217ENST00000479161 LY6G5BQ8NDX9 201 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 C8orf46Q8TAG6 207 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 NUDT16L1Q9BRJ7 211 aaKnown RBP12.84□□□□□ -0.35
C9orf3-217ENST00000479161 MND1Q9BWT6 205 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 AUP1Q9Y679 476 aa12.84□□□□□ -0.35
C9orf3-217ENST00000479161 CUBNO60494 3623 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 IGKV1D-17A0A075B6S4 117 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 IGHV3OR15-7A0A075B7D8 119 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 TRBV5-5A0A0J9YX44 114 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 FAM230AA0A1W2PPH8 454 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 FCN3O75636 299 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 CYB5AP00167 134 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 CRHBPP24387 322 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 SRP14P37108 136 aaKnown RBP12.83□□□□□ -0.36
C9orf3-217ENST00000479161 PDZK1IP1Q13113 114 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 IRF3Q14653 427 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 DMRTC1Q5HYR2 192 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 RBM48Q5RL73 367 aaKnown RBP12.83□□□□□ -0.36
C9orf3-217ENST00000479161 ANGPTL5Q86XS5 388 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 ZNF561Q8N587 486 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 RGP1Q92546 391 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-217ENST00000479161 GHSRQ92847 366 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 UPRTQ96BW1 309 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 PGLYRP3Q96LB9 341 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 CEP19Q96LK0 163 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 GAFA1Q96PS6 74 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 CCL13Q99616 98 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 FAM234AQ9H0X4 552 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 SMURF1Q9HCE7 757 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 MTCH1Q9NZJ7 389 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 METRNQ9UJH8 293 aa12.83□□□□□ -0.36
C9orf3-217ENST00000479161 SIRT4Q9Y6E7 314 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-217ENST00000479161 C22orf46C9J442 243 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 PTGES3LE9PB15 166 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 DENRO43583 198 aaKnown RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 MRPS14O60783 128 aaKnown RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 NXPH2O95156 264 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 C1orf122Q6ZSJ8 110 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 USP43Q70EL4 1123 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 TRMT10AQ8TBZ6 339 aaKnown RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 TSEN15Q8WW01 171 aaKnown RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 TMEM106AQ96A25 262 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 SEH1LQ96EE3 360 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 ZNF184Q99676 751 aaPredicted RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 ISYNA1Q9NPH2 558 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 RPUSD1Q9UJJ7 312 aaKnown RBP12.82□□□□□ -0.36
C9orf3-217ENST00000479161 BLOC1S6Q9UL45 172 aa12.82□□□□□ -0.36
C9orf3-217ENST00000479161 DSCAML1Q8TD84 2053 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 TRBV23-1A0A0A0MS06 115 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 H3BSH0 61 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 OCM2P0CE71 109 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 OCMP0CE72 109 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-217ENST00000479161 RAB3AP20336 220 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 PRDX2P32119 198 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 RPS11P62280 158 aaKnown RBP eCLIP12.81□□□□□ -0.36
C9orf3-217ENST00000479161 ZNF146Q15072 292 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 SPHARQ15513 63 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 Q499Y3 187 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 CRIP3Q6Q6R5 217 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 SLC25A26Q70HW3 274 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 BTN2A1Q7KYR7 527 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 PRSS48Q7RTY5 328 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 CDH26Q8IXH8 852 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 MS4A15Q8N5U1 240 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 KIR3DL3Q8N743 410 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 OR5T2Q8NGG2 359 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 OR13C9Q8NGT0 318 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 TBC1D15Q8TC07 691 aa12.81□□□□□ -0.36
C9orf3-217ENST00000479161 DCTN5Q9BTE1 182 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms