RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF3P17036 446 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ACKR3P25106 362 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ALDH3A1P30838 453 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 RPS27P42677 84 aaKnown RBP3.59□□□□□ -1.83
USP4-209ENST00000475873 RAP1BP61224 184 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ESRRGP62508 458 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 RAP1AP62834 184 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 PITPNAQ00169 270 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 CAV1Q03135 178 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 TNP2Q05952 138 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 MZT1Q08AG7 82 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 MAD2L1Q13257 205 aaPredicted RBP3.59□□□□□ -1.83
USP4-209ENST00000475873 PIN1Q13526 163 aaPredicted RBP3.59□□□□□ -1.83
USP4-209ENST00000475873 PRAMEF5Q5TYX0 476 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 Q6ZR54 194 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 SLC16A9Q7RTY1 509 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 THNSL2Q86YJ6 484 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 WFDC3Q8IUB2 231 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 OR6V1Q8N148 313 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ABHD12Q8N2K0 398 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ZNF676Q8N7Q3 588 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 TPRX1Q8N7U7 411 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 Q8N9W7 124 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 FAM81AQ8TBF8 368 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 OR5P3Q8WZ94 311 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 UTP4Q969X6 686 aaKnown RBP3.59□□□□□ -1.83
USP4-209ENST00000475873 RSRP1Q9BUV0 290 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 NUAK2Q9H093 628 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 C1orf21Q9H246 121 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 OR51J1Q9H342 316 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 GHITMQ9H3K2 345 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 NCOR1P1Q9H4R4 102 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 RERGLQ9H628 205 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 SRD5A3Q9H8P0 318 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 CACYBPQ9HB71 228 aaKnown RBP3.59□□□□□ -1.83
USP4-209ENST00000475873 ZNF286AQ9HBT8 521 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 PLSCR3Q9NRY6 295 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 PPP1R14DQ9NXH3 145 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 SLC25A37Q9NYZ2 338 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 SLAMF8Q9P0V8 285 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 ZNF319Q9P2F9 582 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 DNAJB9Q9UBS3 223 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 DCDC2Q9UHG0 476 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 POLR1DQ9Y2S0 133 aa3.59□□□□□ -1.83
USP4-209ENST00000475873 LOC100996750A0A140TA64 210 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ARRDC5A6NEK1 342 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ANKRD30BLA7E2S9 258 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 BUB1B-PAK6H3BSN5 160 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 H3BUI4 141 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 K7N7A8 449 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 RIPK2O43353 540 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 SOX15O60248 233 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 KHDRBS3O75525 346 aaKnown RBP3.58□□□□□ -1.84
USP4-209ENST00000475873 IGLV1-40P01703 118 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 RHCEP18577 417 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CD247P20963 164 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 PRDX2P32119 198 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CRYBA2P53672 197 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CD81P60033 236 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 NANOS2P60321 138 aaKnown RBP3.58□□□□□ -1.84
USP4-209ENST00000475873 MRPS15P82914 257 aaKnown RBP3.58□□□□□ -1.84
USP4-209ENST00000475873 CDK6Q00534 326 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 HLA-DRB5Q30154 266 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 MAJINQ3KP22 176 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CCDC153Q494R4 210 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CEP78Q5JTW2 689 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 REEP3Q6NUK4 255 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 GTSCR1Q86UQ5 136 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 BATF2Q8N1L9 274 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ZNF561Q8N587 486 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 Q8N6K4 173 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 SPATA4Q8NEY3 305 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 OR13C2Q8NGS9 318 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 OR51A7Q8NH64 312 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CASTOR1Q8WTX7 329 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 TMEM239Q8WW34 195 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 LRGUKQ96M69 825 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ZNF714Q96N38 554 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ZBTB18Q99592 522 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 SPATA5L1Q9BVQ7 753 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 PAPOLGQ9BWT3 736 aaKnown RBP3.58□□□□□ -1.84
USP4-209ENST00000475873 KRTAP4-6Q9BYQ5 205 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 OR51I2Q9H344 312 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 GPR173Q9NS66 373 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 AIG1Q9NVV5 245 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 FKBP14Q9NWM8 211 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 CYB5R1Q9UHQ9 305 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 ADAM30Q9UKF2 790 aa3.58□□□□□ -1.84
USP4-209ENST00000475873 PKHD1L1Q86WI1 4243 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TMEM82A0PJX8 343 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 FAM90A10PA6NDY2 464 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TMEM247A6NEH6 219 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 ZNF785A8K8V0 405 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 ZNF850A8MQ14 1090 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 LEUTXA8MZ59 168 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 C5orf58C9J3I9 102 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 PSMD9O00233 223 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 CLIC1O00299 241 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 CDC42EP2O14613 210 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 ITM2AO43736 263 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms