RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 FAM90A1Q86YD7 464 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 GCSAMQ8N6F7 178 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 TBC1D15Q8TC07 691 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 H1FXQ92522 213 aaKnown RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 LHX4Q969G2 390 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 TMIGD2Q96BF3 282 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 C1orf147Q96MC9 270 aaPredicted RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 ZNF696Q9H7X3 374 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 SMURF1Q9HCE7 757 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 NOX4Q9NPH5 578 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 FRRS1LQ9P0K9 344 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 FAM96BQ9Y3D0 163 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 SOX21Q9Y651 276 aaPredicted RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 ANKRD61A6NGH8 418 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 SRRM5B3KS81 715 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 PTGES3LE9PB15 166 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 NDUFB3O43676 98 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 KNG1P01042 644 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 LIMS3P0CW19 117 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 LIMS4P0CW20 117 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 CCR9P51686 369 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 NANOS3P60323 173 aaKnown RBP12.52□□□□□ -0.41
VARS-223ENST00000474643 IKZF1Q13422 519 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 IRF3Q14653 427 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 CCDC58Q4VC31 144 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 LRRC10Q5BKY1 277 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 FDX2Q6P4F2 183 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 HAGHLQ6PII5 290 aaPredicted RBP12.52□□□□□ -0.41
VARS-223ENST00000474643 FIP1L1Q6UN15 594 aaKnown RBP12.52□□□□□ -0.41
VARS-223ENST00000474643 WDR82Q6UXN9 313 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 AHSA2Q719I0 299 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 PDZD9Q8IXQ8 264 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 OR13C3Q8NGS6 347 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 OR4F5Q8NH21 305 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 OR5AK2Q8NH90 309 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 ZNF671Q8TAW3 534 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 TRMT10AQ8TBZ6 339 aaKnown RBP12.52□□□□□ -0.41
VARS-223ENST00000474643 NPRL2Q8WTW4 380 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 SSMEM1Q8WWF3 244 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 DACT3Q96B18 629 aaPredicted RBP12.52□□□□□ -0.41
VARS-223ENST00000474643 CCL13Q99616 98 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 BEX1Q9HBH7 125 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 HHLA2Q9UM44 414 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 ERGIC3Q9Y282 383 aa12.52□□□□□ -0.41
VARS-223ENST00000474643 TRBV2A0A0J9YWF9 115 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 A0A1B0GUS0 222 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 FAM230AA0A1W2PPH8 454 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 BTBD17A6NE02 478 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 FAM181BA6NEQ2 426 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 MDKP21741 143 aaPredicted RBP12.51□□□□□ -0.41
VARS-223ENST00000474643 ETV1P50549 477 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 BDH1Q02338 343 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 ACSM1Q08AH1 577 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 ZNF573Q86YE8 665 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 C11orf53Q8IXP5 236 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 SVOPQ8N4V2 548 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 OR10Z1Q8NGY1 313 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 MND1Q9BWT6 205 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 FGF23Q9GZV9 251 aaPredicted RBP12.51□□□□□ -0.41
VARS-223ENST00000474643 TLNRD1Q9H1K6 362 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 CNTD2Q9H8S5 307 aa12.51□□□□□ -0.41
VARS-223ENST00000474643 PAK1IP1Q9NWT1 392 aaPredicted RBP12.51□□□□□ -0.41
VARS-223ENST00000474643 IGHV1-69DA0A0B4J2H0 117 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 CENPVL3A0A0U1RRI6 287 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TMEM212A6NML5 194 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 AKR7A2O43488 359 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 IGHV1-69P01742 117 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 ISG15P05161 165 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 GLRA1P23415 457 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 EEF1B2P24534 225 aaKnown RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 C21orf33P30042 268 aaPredicted RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 HAAOP46952 286 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TGM4P49221 684 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 RAG2P55895 527 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 CNN3Q15417 329 aaKnown RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 TBCEQ15813 527 aaPredicted RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 C11orf91Q3C1V1 193 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 OR2G6Q5TZ20 316 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TEX36Q5VZQ5 186 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TMEM42Q69YG0 159 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 Q6ZSR3 168 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 KRT74Q7RTS7 529 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 ZNF485Q8NCK3 441 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TSEN15Q8WW01 171 aaKnown RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 PP6455Q8WZ26 134 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 RNF166Q96A37 237 aaPredicted RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 FGGYQ96C11 551 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 C12orf43Q96C57 262 aaKnown RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 C10orf35Q96D05 121 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 TBX15Q96SF7 602 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 OR51I2Q9H344 312 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 ISYNA1Q9NPH2 558 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 SNTG1Q9NSN8 517 aa12.5□□□□□ -0.41
VARS-223ENST00000474643 RPUSD1Q9UJJ7 312 aaKnown RBP12.5□□□□□ -0.41
VARS-223ENST00000474643 A0A1W2PQ09 198 aa12.49□□□□□ -0.41
VARS-223ENST00000474643 OR4C45A6NMZ5 311 aa12.49□□□□□ -0.41
VARS-223ENST00000474643 E9PI62 339 aa12.49□□□□□ -0.41
VARS-223ENST00000474643 MYL12BO14950 172 aa12.49□□□□□ -0.41
VARS-223ENST00000474643 GPR37O15354 613 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms