RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PPP1R35Q8TAP8 253 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 IL36RNQ9UBH0 155 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 WARS2Q9UGM6 360 aaKnown RBP13.58□□□□□ -0.24
USP40-212ENST00000473191 MGAM2Q2M2H8 2515 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 ANKRD61A6NGH8 418 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 METTL15A6NJ78 407 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 CLPXO76031 633 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 NXPH2O95156 264 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 KRT8P05787 483 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 OR2T7P0C7T2 308 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 PIPP12273 146 aaPredicted RBP13.57□□□□□ -0.24
USP40-212ENST00000473191 RPL31P62899 125 aaKnown RBP13.57□□□□□ -0.24
USP40-212ENST00000473191 LY6EQ16553 131 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 SMIM21Q3B7S5 101 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 NCR3LG1Q68D85 454 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 OR2T27Q8NH04 317 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 CENPNQ96H22 339 aaPredicted RBP13.57□□□□□ -0.24
USP40-212ENST00000473191 PPA2Q9H2U2 334 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 MTCH1Q9NZJ7 389 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 SIGLEC9Q9Y336 463 aa13.57□□□□□ -0.24
USP40-212ENST00000473191 TRBV23-1A0A0A0MS06 115 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 H3BNX3 289 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 H3BUX3 64 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 SYT7O43581 403 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 PAHP00439 452 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 TK1P04183 234 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 CALCBP10092 127 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 FCGR1AP12314 374 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 COX7A1P24310 79 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 RASSF2P50749 326 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 ACTR3P61158 418 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 RPL15P61313 204 aaKnown RBP13.56□□□□□ -0.24
USP40-212ENST00000473191 ISL1P61371 349 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 COL10A1Q03692 680 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 DHRS7BQ6IAN0 325 aaPredicted RBP13.56□□□□□ -0.24
USP40-212ENST00000473191 SLC35E4Q6ICL7 350 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 ZNF782Q6ZMW2 699 aaPredicted RBP13.56□□□□□ -0.24
USP40-212ENST00000473191 GDPGP1Q6ZNW5 385 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 RNF144BQ7Z419 303 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 DYNAPQ8N1N2 210 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 ZNF561Q8N587 486 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 BEND2Q8NDZ0 799 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 SLAMF9Q96A28 289 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 SSX3Q99909 188 aa13.56□□□□□ -0.24
USP40-212ENST00000473191 CAB39Q9Y376 341 aaPredicted RBP13.56□□□□□ -0.24
USP40-212ENST00000473191 ATP5HO75947 161 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 DLX6P56179 175 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 DEFA6Q01524 100 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 ACSM1Q08AH1 577 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 BLMHQ13867 455 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 ZIK1Q3SY52 487 aaPredicted RBP13.55□□□□□ -0.24
USP40-212ENST00000473191 LDLRAD2Q5SZI1 272 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 TCF23Q7RTU1 214 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 LHFPL4Q7Z7J7 247 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 OR8J1Q8NGP2 316 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 ITFG2Q969R8 447 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 ADAT3Q96EY9 351 aaPredicted RBP13.55□□□□□ -0.24
USP40-212ENST00000473191 C16orf95Q9H693 158 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 GNG8Q9UK08 70 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 POLDIP2Q9Y2S7 368 aa13.55□□□□□ -0.24
USP40-212ENST00000473191 SF3B6Q9Y3B4 125 aaKnown RBP13.55□□□□□ -0.24
USP40-212ENST00000473191 IGKV1-9A0A0C4DH69 117 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 DHRS7CA6NNS2 312 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 E9PQ18 207 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 J3QRE1 110 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 SLC1A7O00341 560 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 EI24O14681 340 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 ENTPD6O75354 484 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 ZNF737O75373 536 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 TSPAN9O75954 239 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 TSPAN15O95858 294 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 NANOS3P60323 173 aaKnown RBP13.54□□□□□ -0.24
USP40-212ENST00000473191 IL24Q13007 206 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 CRIP3Q6Q6R5 217 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 OR5D13Q8NGL4 314 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 OR10AC1Q8NH08 325 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 PIFOQ8TCI5 191 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 RBM4BQ9BQ04 359 aaKnown RBP13.54□□□□□ -0.24
USP40-212ENST00000473191 PKIBQ9C010 78 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 CHST5Q9GZS9 411 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 PLEKHA1Q9HB21 404 aa13.54□□□□□ -0.24
USP40-212ENST00000473191 LOC107986453A0A1B0GWG9 222 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 TMEM82A0PJX8 343 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 BTBD17A6NE02 478 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 K7N7A8 449 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 CHST1O43916 411 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 SULT1C4O75897 302 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 ALPLP05186 524 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 JUNBP17275 347 aaPredicted RBP13.53□□□□□ -0.24
USP40-212ENST00000473191 ATP6V1E1P36543 226 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 NPBWR2P48146 333 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 OR12D2P58182 307 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 KPNB1Q14974 876 aaKnown RBP13.53□□□□□ -0.24
USP40-212ENST00000473191 PLA1AQ53H76 456 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 SLC25A26Q70HW3 274 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 TPRX1Q8N7U7 411 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 ASCC1Q8N9N2 400 aaKnown RBP13.53□□□□□ -0.24
USP40-212ENST00000473191 MEGF9Q9H1U4 602 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 FRRS1LQ9P0K9 344 aa13.53□□□□□ -0.24
USP40-212ENST00000473191 ENOPH1Q9UHY7 261 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms