RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CALCBP10092 127 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 BCL3P20749 454 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 IL2RGP31785 369 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 OR10A3P58181 314 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 LSM3P62310 102 aaKnown RBP12.38□□□□□ -0.43
COL9A3-209ENST00000469852 SLC16A12Q6ZSM3 486 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 NR2C2APQ86WQ0 139 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 FAM90A1Q86YD7 464 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 C1orf87Q8N0U7 546 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 JAGN1Q8N5M9 183 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 OR5T2Q8NGG2 359 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 OR4D6Q8NGJ1 314 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 OR51F2Q8NH61 342 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 TNFAIP8L1Q8WVP5 186 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 RAB1CQ92928 201 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 GPER1Q99527 375 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 CNTD2Q9H8S5 307 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 NEK6Q9HC98 313 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 SNTG1Q9NSN8 517 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 RBFOX1Q9NWB1 397 aaKnown RBP12.38□□□□□ -0.43
COL9A3-209ENST00000469852 AK6Q9Y3D8 172 aaKnown RBP12.38□□□□□ -0.43
COL9A3-209ENST00000469852 PPIAL4AQ9Y536 164 aa12.38□□□□□ -0.43
COL9A3-209ENST00000469852 TRAV1-2A0A0B4J238 106 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 A0A1B0GW55 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 OOEPA6NGQ2 149 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 LGALS8O00214 317 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 AIREO43918 545 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 CDRT1O95170 752 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 SFTPBP07988 381 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 CLEC2LP0C7M8 214 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L2P0CJ85 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L3P0CJ86 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L4P0CJ87 422 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L5P0CJ88 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L6P0CJ89 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L7P0CJ90 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 TMEM225BP0DP42 221 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 CD37P11049 281 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 SLC25A16P16260 332 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 GLRA1P23415 457 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 ZNF404Q494X3 552 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 TEX36Q5VZQ5 186 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4L9Q6RFH8 374 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-209ENST00000469852 LYPD2Q6UXB3 125 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 ACP7Q6ZNF0 438 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 LRRC28Q86X40 367 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-209ENST00000469852 NKAIN3Q8N8D7 197 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 OR10K1Q8NGX5 313 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 CLDND2Q8NHS1 167 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 ZNF671Q8TAW3 534 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 TIMD4Q96H15 378 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 CEP19Q96LK0 163 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 TMEM246Q9BRR3 403 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 REG4Q9BYZ8 158 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 FAM192AQ9GZU8 254 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 HES4Q9HCC6 221 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 DUX4Q9UBX2 424 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 SCOCQ9UIL1 159 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 POLDIP2Q9Y2S7 368 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 ZANQ9Y493 2812 aa12.37□□□□□ -0.43
COL9A3-209ENST00000469852 YLPM1P49750 1951 aaKnown RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 H7C1Q1 480 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 TNFRSF13BO14836 293 aaPredicted RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 KDM4BO94953 1096 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 GYPAP02724 150 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 ACAA1P09110 424 aaPredicted RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 AMY2BP19961 511 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 MDH2P40926 338 aaKnown RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 PTGFRP43088 359 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 RPL5P46777 297 aaKnown RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 CEBPDP49716 269 aaPredicted RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 KRTAP21-3Q3LHN1 58 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 GPR107Q5VW38 600 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 ASCL4Q6XD76 172 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 GPR141Q7Z602 305 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 PEG10Q86TG7 708 aaKnown RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 MKXQ8IYA7 352 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 C1orf147Q96MC9 270 aaPredicted RBP12.36□□□□□ -0.43
COL9A3-209ENST00000469852 SLITRK2Q9H156 845 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 KCNK15Q9H427 330 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 SMURF1Q9HCE7 757 aa12.36□□□□□ -0.43
COL9A3-209ENST00000469852 IGKV1D-17A0A075B6S4 117 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 A0A0G2JK05 382 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 A0A1W2PP11 408 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 MEGF11A6BM72 1044 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 CEACAM18A8MTB9 384 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 TRAPPC2LH3BP13 241 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 FCN3O75636 299 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 NXPH2O95156 264 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 MYL9P24844 172 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 SDC2P34741 201 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 SNU13P55769 128 aaKnown RBP12.35□□□□□ -0.43
COL9A3-209ENST00000469852 CAV3P56539 151 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 SEC61A1P61619 476 aaKnown RBP12.35□□□□□ -0.43
COL9A3-209ENST00000469852 LMO4P61968 165 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 NCS1P62166 190 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 C1orf100Q5SVJ3 147 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 STUMQ69YW2 141 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 FAM166AQ6J272 317 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 CDH26Q8IXH8 852 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms