RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 DERL3Q96Q80 235 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 WDR13Q9H1Z4 485 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 RHOFQ9HBH0 211 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 KAAG1Q9UBP8 84 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 FOXJ3Q9UPW0 622 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 ABCA1O95477 2261 aa16.54■□□□□ 0.24
COL9A3-204ENST00000463487 YLPM1P49750 1951 aaKnown RBP16.53■□□□□ 0.24
COL9A3-204ENST00000463487 TRBV5-7A0A0A0MS05 114 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 OR2AT4A6NND4 320 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-204ENST00000463487 GPX5O75715 221 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 GABRA5P31644 462 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 ARMCX4Q5H9R4 360 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 DDI2Q5TDH0 399 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 UBE2UQ5VVX9 321 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 STUMQ69YW2 141 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 ACP7Q6ZNF0 438 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 SATL1Q86VE3 508 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 PHC2Q8IXK0 858 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 PHYHIPQ92561 330 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 SLAMF9Q96A28 289 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 SLITRK2Q9H156 845 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 SMURF1Q9HCE7 757 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 TCF7L1Q9HCS4 588 aa16.53■□□□□ 0.24
COL9A3-204ENST00000463487 A0A0G2JMP0 313 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 A0A0X1KG70 313 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 A8MXK9 166 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 ARL6IP5O75915 188 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 RGS9O75916 674 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-204ENST00000463487 TMEM225BP0DP42 221 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 HNF1AP20823 631 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 PSMB9P28065 219 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 GABRA2P47869 451 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 LCN2P80188 198 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 HOXA4Q00056 320 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-204ENST00000463487 C11orf91Q3C1V1 193 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 ATPAF1Q5TC12 328 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-204ENST00000463487 CD276Q5ZPR3 534 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 NKAIN3Q8N8D7 197 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 OR4M2Q8NGB6 313 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 RFT1Q96AA3 541 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 SPACA5Q96QH8 159 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 S100A13Q99584 98 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 NOX4Q9NPH5 578 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 SNTG1Q9NSN8 517 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 HIF1ANQ9NWT6 349 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 GLS2Q9UI32 602 aa16.52■□□□□ 0.24
COL9A3-204ENST00000463487 CSPG4Q6UVK1 2322 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 A0A087WXM4 84 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 PPIAL4CA0A0B4J2A2 164 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 A0A1W2PPK0 400 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 MEGF11A6BM72 1044 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 GPR37O15354 613 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 NDUFB3O43676 98 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 KNG1P01042 644 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 IGFBP3P17936 291 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF93P35789 620 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-204ENST00000463487 BMXP51813 675 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 ERVK11-1P61568 191 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 IL13RA1P78552 427 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 HSD17B12Q53GQ0 312 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 LRRC10Q5BKY1 277 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 LYPD2Q6UXB3 125 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 Q71RC1 249 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-204ENST00000463487 CEACAM19Q7Z692 300 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 CDH26Q8IXH8 852 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 TEX29Q8N6K0 151 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 OR51A2Q8NGJ7 313 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 OR5D18Q8NGL1 313 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 ANGPTL6Q8NI99 470 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 EMG1Q92979 244 aaKnown RBP16.51■□□□□ 0.23
COL9A3-204ENST00000463487 TMEM203Q969S6 136 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF488Q96MN9 340 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 CCL13Q99616 98 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 FAM192AQ9GZU8 254 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 HES4Q9HCC6 221 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 TMEM160Q9NX00 188 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 MTCH1Q9NZJ7 389 aa16.51■□□□□ 0.23
COL9A3-204ENST00000463487 POLR3KQ9Y2Y1 108 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-204ENST00000463487 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.51■□□□□ 0.233e-13■■■□□ 17.8
COL9A3-204ENST00000463487 CCRL2O00421 344 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 SPRY1O43609 319 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-204ENST00000463487 PSG2P11465 335 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 DCAF12L2Q5VW00 463 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 WDR25Q64LD2 544 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-204ENST00000463487 ASPHD2Q6ICH7 369 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 BTNL3Q6UXE8 466 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 UNQ9370/PRO34162Q6UXP9 181 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 OR5T2Q8NGG2 359 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 OR52N4Q8NGI2 321 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 TNFAIP8L1Q8WVP5 186 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 SEH1LQ96EE3 360 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 PCDHB16Q9NRJ7 776 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 NDUFB11Q9NX14 153 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 LPAR3Q9UBY5 353 aa16.5■□□□□ 0.23
COL9A3-204ENST00000463487 TRAV8-7A0A075B6U6 113 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 J3QLI3 93 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 TNFRSF13BO14836 293 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 PHF1O43189 567 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 INMTO95050 263 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms