RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 NRIP2Q9BQI9 281 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 ADI1Q9BV57 179 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 PKIBQ9C010 78 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 C19orf12Q9NSK7 152 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 OR14J1Q9UGF5 321 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 GNG8Q9UK08 70 aa11.42□□□□□ -0.58
USP4-206ENST00000461553 SF3B6Q9Y3B4 125 aaKnown RBP11.42□□□□□ -0.58
USP4-206ENST00000461553 LOC107986453A0A1B0GWG9 222 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 hCG_1809904A0A1W2PP81 198 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 A0A1W2PPE2 198 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 FAM230AA0A1W2PPH8 454 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 A0A1W2PR64 198 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 A0A1W2PRV1 198 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 NOS1APO75052 506 aaPredicted RBP11.41□□□□□ -0.58
USP4-206ENST00000461553 UBCP0CG48 685 aaKnown RBP11.41□□□□□ -0.58
USP4-206ENST00000461553 CEBPDP49716 269 aaPredicted RBP11.41□□□□□ -0.58
USP4-206ENST00000461553 IL24Q13007 206 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 CNN3Q15417 329 aaKnown RBP11.41□□□□□ -0.58
USP4-206ENST00000461553 CD177Q8N6Q3 437 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 RORBQ92753 470 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 EME1Q96AY2 570 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 CHST5Q9GZS9 411 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 HES4Q9HCC6 221 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 RNF114Q9Y508 228 aa11.41□□□□□ -0.58
USP4-206ENST00000461553 TET2Q6N021 2002 aaPredicted RBP11.41□□□□□ -0.58
USP4-206ENST00000461553 EI24O14681 340 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 SERPINA3P01011 423 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 PRDX2P32119 198 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 ACTC1P68032 377 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 ACTA1P68133 377 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 MIDNQ504T8 468 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 TP53I3Q53FA7 332 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 CALHM1Q8IU99 346 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 ASCC1Q8N9N2 400 aaKnown RBP11.4□□□□□ -0.58
USP4-206ENST00000461553 C10orf35Q96D05 121 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 BORCS8Q96FH0 119 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 FAM234AQ9H0X4 552 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 USE1Q9NZ43 259 aa11.4□□□□□ -0.58
USP4-206ENST00000461553 TIMM23O14925 209 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 ALPLP05186 524 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 TGFBR2P37173 567 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 ZNF85Q03923 595 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 SRSF4Q08170 494 aaKnown RBP11.39□□□□□ -0.59
USP4-206ENST00000461553 ZFP1Q6P2D0 407 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 ANGPTL5Q86XS5 388 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 MKXQ8IYA7 352 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 BEND2Q8NDZ0 799 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 OR4M1Q8NGD0 313 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 LINC01006Q8NI28 216 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 TRUB1Q8WWH5 349 aaKnown RBP11.39□□□□□ -0.59
USP4-206ENST00000461553 CEP19Q96LK0 163 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 CITED1Q99966 193 aa11.39□□□□□ -0.59
USP4-206ENST00000461553 SNTNA6NMZ2 147 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 H3BUX3 64 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 M0QZ24 198 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 TK1P04183 234 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 PIPP12273 146 aaPredicted RBP11.38□□□□□ -0.59
USP4-206ENST00000461553 CCL3L1P16619 93 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 COX7A1P24310 79 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ALDH3A2P51648 485 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 FUT6P51993 359 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ERVFRD-1P60508 538 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ISL1P61371 349 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ERVK11-1P61568 191 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 COL10A1Q03692 680 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ZNF273Q14593 569 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 UBE2V2Q15819 145 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 LRRC75BQ2VPJ9 315 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 MEDAGQ5VYS4 303 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 HCP5Q6MZN7 132 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 Q6ZSV7 163 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 CCDC121Q6ZUS5 278 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 PRSS35Q8N3Z0 413 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 ZSCAN4Q8NAM6 433 aaPredicted RBP11.38□□□□□ -0.59
USP4-206ENST00000461553 PP6455Q8WZ26 134 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 SLAMF9Q96A28 289 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 RNFT2Q96EX2 444 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 HRASLS5Q96KN8 279 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 HEXA-AS1Q9H8Q6 139 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 KIAA2026Q5HYC2 2103 aa11.38□□□□□ -0.59
USP4-206ENST00000461553 VWFP04275 2813 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 WIPF1O43516 503 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 ENTPD6O75354 484 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 CLPXO76031 633 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 CYB5AP00167 134 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 CHRM2P08172 466 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 ZNF20P17024 532 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 KIR3DL2P43630 455 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 LGALS4P56470 323 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 EDDM3BP56851 147 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 PROK1P58294 105 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 ACTA2P62736 377 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 ACTG2P63267 376 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 KPNB1Q14974 876 aaKnown RBP11.37□□□□□ -0.59
USP4-206ENST00000461553 TMEM244Q5VVB8 128 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 TMEM200BQ69YZ2 307 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 SLC25A26Q70HW3 274 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 GDPD3Q7L5L3 318 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 Q8IYB0 196 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 EMG1Q92979 244 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms