RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ZNF184Q99676 751 aaPredicted RBP16.57■□□□□ 0.24
COL9A3-202ENST00000452372 NRIP2Q9BQI9 281 aa16.57■□□□□ 0.24
COL9A3-202ENST00000452372 RASSF4Q9H2L5 321 aa16.57■□□□□ 0.24
COL9A3-202ENST00000452372 C7orf69Q9H7B7 122 aa16.57■□□□□ 0.24
COL9A3-202ENST00000452372 KIR2DS1A0A191URI9 304 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 OR2AT4A6NND4 320 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 DVL1O14640 695 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 AVPP01185 164 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 CD2P06729 351 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 C11orf91Q3C1V1 193 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 CD276Q5ZPR3 534 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 ACP7Q6ZNF0 438 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 ZNF788Q6ZQV5 615 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 C1orf229Q6ZS94 237 aaPredicted RBP16.56■□□□□ 0.24
COL9A3-202ENST00000452372 LHFPL2Q6ZUX7 228 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 ZFP41Q8N8Y5 198 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 OPALINQ96PE5 141 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 MND1Q9BWT6 205 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 NEK6Q9HC98 313 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 SMURF1Q9HCE7 757 aa16.56■□□□□ 0.24
COL9A3-202ENST00000452372 LOC105371242A0A075B767 164 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 IGHV2-70DA0A0C4DH43 119 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 FCN3O75636 299 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 CD1AP06126 327 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 OCM2P0CE71 109 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 OCMP0CE72 109 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-202ENST00000452372 PSG2P11465 335 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 SOX2P48431 317 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 ERVK11-1P61568 191 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 BDH1Q02338 343 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 PAX8Q06710 450 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 ACSM1Q08AH1 577 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 DOC2BQ14184 412 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 IRF3Q14653 427 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 SMIM21Q3B7S5 101 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 YIF1BQ5BJH7 314 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 RBM48Q5RL73 367 aaKnown RBP16.55■□□□□ 0.24
COL9A3-202ENST00000452372 TEX29Q8N6K0 151 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 FAM216BQ8N7L0 139 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 MED30Q96HR3 178 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 PGLYRP3Q96LB9 341 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 HES4Q9HCC6 221 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 MTCH1Q9NZJ7 389 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 OPN4Q9UHM6 478 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 ZNF222Q9UK12 451 aa16.55■□□□□ 0.24
COL9A3-202ENST00000452372 TENM1Q9UKZ4 2725 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 IGKV1D-17A0A075B6S4 117 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 A0A1B0GW55 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DENRO43583 198 aaKnown RBP16.54■□□□□ 0.24
COL9A3-202ENST00000452372 RGS10O43665 173 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 SULT1B1O43704 296 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 NXPH2O95156 264 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L2P0CJ85 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L3P0CJ86 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L4P0CJ87 422 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L5P0CJ88 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L6P0CJ89 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L7P0CJ90 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 CELP19835 753 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 SRP14P37108 136 aaKnown RBP16.54■□□□□ 0.24
COL9A3-202ENST00000452372 ZNF529Q6P280 563 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4L9Q6RFH8 374 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-202ENST00000452372 BTNL3Q6UXE8 466 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 SLC25A26Q70HW3 274 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 TMEM106AQ96A25 262 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 GAFA1Q96PS6 74 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 NUDT16L1Q9BRJ7 211 aaKnown RBP16.54■□□□□ 0.24
COL9A3-202ENST00000452372 Q9H521 79 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 DUX4Q9UBX2 424 aa16.54■□□□□ 0.24
COL9A3-202ENST00000452372 LSM2Q9Y333 95 aaKnown RBP16.54■□□□□ 0.24
COL9A3-202ENST00000452372 TRBV5-5A0A0J9YX44 114 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 NKX6-3A6NJ46 265 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 C22orf46C9J442 243 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 GPR37O15354 613 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 NDUFB3O43676 98 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 ECDO95905 644 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-202ENST00000452372 PLATP00750 562 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 GABRA2P47869 451 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 RPS11P62280 158 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL9A3-202ENST00000452372 IL13RA1P78552 427 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 SPHARQ15513 63 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 LRRC10Q5BKY1 277 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 ASPHD2Q6ICH7 369 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 MKXQ8IYA7 352 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 OR13C5Q8NGS8 318 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 SLAMF9Q96A28 289 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 CEP19Q96LK0 163 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 AUP1Q9Y679 476 aa16.53■□□□□ 0.24
COL9A3-202ENST00000452372 PNMA8CA0A1B0GUJ8 204 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 RFPL4AA6NLU0 287 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 RFPL4AL1F8VTS6 287 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 F8VVB4 439 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 F8VWA3 439 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 SIGLEC5O15389 551 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 ENSAO43768 121 aaKnown RBP16.52■□□□□ 0.24
COL9A3-202ENST00000452372 CYB5AP00167 134 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 TFF1P04155 84 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 LIPFP07098 398 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 RAB3AP20336 220 aa16.52■□□□□ 0.24
COL9A3-202ENST00000452372 PDZK1IP1Q13113 114 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms