RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 KPTNQ9Y664 436 aa10.5□□□□□ -0.73
PRPF40A-203ENST00000448428 IGKV1-9A0A0C4DH69 117 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 MDFIC2A0A1B0GVS7 189 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 DNAJC9-AS1A6NH13 148 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 F8VVB4 439 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 F8VWA3 439 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 NXPH2O95156 264 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 LIMS3P0CW19 117 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 LIMS4P0CW20 117 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 PRTN3P24158 256 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 CEBPDP49716 269 aaPredicted RBP10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 PDCD1Q15116 288 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 DEFB112Q30KQ8 113 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 TTC23Q5W5X9 447 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 DHRSXQ8N5I4 330 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 Q8N7P7 452 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 TMEM185AQ8NFB2 350 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 OR51A4Q8NGJ6 313 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 LHX4Q969G2 390 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 PRDM13Q9H4Q3 707 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 ELL3Q9HB65 397 aaPredicted RBP10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 MTCH1Q9NZJ7 389 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 HHLA2Q9UM44 414 aa10.49□□□□□ -0.73
PRPF40A-203ENST00000448428 IGHV1-69DA0A0B4J2H0 117 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 INMTO95050 263 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 IGHV1-69P01742 117 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 ATF1P18846 271 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 ETV1P50549 477 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 ACTG1P63261 375 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 CNN3Q15417 329 aaKnown RBP10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 OGFRL1Q5TC84 451 aaPredicted RBP10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 UTS2BQ765I0 119 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 VMO1Q7Z5L0 202 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 PDZD9Q8IXQ8 264 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 CMTM4Q8IZR5 234 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 ZNF561Q8N587 486 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 ZNF676Q8N7Q3 588 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 DNAAF1Q8NEP3 725 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 OR13C3Q8NGS6 347 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 GCDHQ92947 438 aaPredicted RBP10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 BORCS8Q96FH0 119 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 JAM3Q9BX67 310 aa10.48□□□□□ -0.73
PRPF40A-203ENST00000448428 TMEM89A2RUT3 159 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 CASQ2O14958 399 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 ZFPL1O95159 310 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 ZNF20P17024 532 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 AZGP1P25311 298 aaKnown RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 DCKP27707 260 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 RBP2P50120 134 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 GTF2A1P52655 376 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 CAPZA1P52907 286 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 GBX2P52951 348 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 ATP1B3P54709 279 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 DLX1P56177 255 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 PRB3Q04118 309 aaPredicted RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 MRPL28Q13084 256 aaKnown RBP10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 SLC9A3R2Q15599 337 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 C1orf122Q6ZSJ8 110 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 SLC25A26Q70HW3 274 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 KIR3DL3Q8N743 410 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 GATAD2BQ8WXI9 593 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 ZDHHC16Q969W1 377 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 SLAMF9Q96A28 289 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 CEP19Q96LK0 163 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 PDCD1LG2Q9BQ51 273 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 SIRT7Q9NRC8 400 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 OR14J1Q9UGF5 321 aa10.47□□□□□ -0.73
PRPF40A-203ENST00000448428 TRBV2A0A0J9YWF9 115 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 A0A1W2PQ09 198 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 CLDN34H7C241 214 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 SLC1A7O00341 560 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 HOXA3O43365 443 aaPredicted RBP10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 KNG1P01042 644 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 GNAO1P09471 354 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 PRKACBP22694 351 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 MTCP1P56278 107 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 IL18R1Q13478 541 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 METAP1DQ6UB28 335 aaPredicted RBP10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 C12orf54Q6X4T0 127 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 RNF144BQ7Z419 303 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 PIP4P2Q8N4L2 257 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 SETD9Q8NE22 299 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 OR5AK2Q8NH90 309 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 TNFRSF14Q92956 283 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 SLC25A28Q96A46 364 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 DCLRE1BQ9H816 532 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 ZMAT3Q9HA38 289 aaKnown RBP10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 C19orf12Q9NSK7 152 aa10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 NKX1-2Q9UD57 310 aaPredicted RBP10.46□□□□□ -0.73
PRPF40A-203ENST00000448428 DNHD1Q96M86 4753 aa10.46□□□□□ -0.74
PRPF40A-203ENST00000448428 DSCAML1Q8TD84 2053 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 TRBV23-1A0A0A0MS06 115 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 IRGMA1A4Y4 181 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 TMEM212A6NML5 194 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 H0YAE9 185 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 RNASEK-C17orf49H0YIS7 233 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 M0R1W7 72 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 SPRY1O43609 319 aaPredicted RBP10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 MT-ND2P03891 347 aa10.45□□□□□ -0.74
PRPF40A-203ENST00000448428 TK1P04183 234 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms