RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NRIP2Q9BQI9 281 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 METTL9Q9H1A3 318 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 ELL3Q9HB65 397 aaPredicted RBP13.27□□□□□ -0.29
USP40-206ENST00000443711 RHOFQ9HBH0 211 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 SMURF1Q9HCE7 757 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 PCDHB16Q9NRJ7 776 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 NPTNQ9Y639 398 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 PPIAL4EA0A075B759 164 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 IGKV1-12A0A0C4DH73 117 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 SMIM31A0A1B0GVY4 71 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 PPIAL4DF5H284 164 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 LGALS8O00214 317 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 SLC22A1O15245 554 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 KDM4BO94953 1096 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 NXPH2O95156 264 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 IGKV1D-12P01611 117 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 UBBP0CG47 229 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 PPIAL4FP0DN26 164 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 EGR1P18146 543 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 CD80P33681 288 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 RPS19P39019 145 aaKnown RBP13.26□□□□□ -0.29
USP40-206ENST00000443711 ERVK11-1P61568 191 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 HNRNPA0Q13151 305 aaKnown RBP13.26□□□□□ -0.29
USP40-206ENST00000443711 GPR176Q14439 515 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 RAB11BQ15907 218 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 SHEQ5VZ18 495 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 AWAT2Q6E213 333 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 FAM166AQ6J272 317 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 GLIPR1L1Q6UWM5 242 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 USP43Q70EL4 1123 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 C10orf105Q8TEF2 133 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 ISOC1Q96CN7 298 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 PIMREGQ9BSJ6 248 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 IL36GQ9NZH8 169 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 GHRLQ9UBU3 117 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 PPIAL4AQ9Y536 164 aa13.26□□□□□ -0.29
USP40-206ENST00000443711 A0A0G2JK05 382 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 SMIM30A4D0T7 59 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 DPPA5A6NC42 116 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 IFITM5A6NNB3 132 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 WNT9BO14905 357 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 ZNF780AO75290 641 aaPredicted RBP13.25□□□□□ -0.29
USP40-206ENST00000443711 FSTL3O95633 263 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 CSTBP04080 98 aaKnown RBP13.25□□□□□ -0.29
USP40-206ENST00000443711 BCL3P20749 454 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 RBMXP38159 391 aaKnown RBP13.25□□□□□ -0.29
USP40-206ENST00000443711 NPBWR2P48146 333 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 GMFBP60983 142 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 SMIM21Q3B7S5 101 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 Q5PR19 223 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 FAM201AQ5SY85 155 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 HES5Q5TA89 166 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 ACP7Q6ZNF0 438 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 DNM1P46Q6ZS02 220 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 NR2C2APQ86WQ0 139 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 FAM90A1Q86YD7 464 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 CROCCP3Q8IVE0 287 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 TBC1D15Q8TC07 691 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 RBM38Q9H0Z9 239 aaKnown RBP13.25□□□□□ -0.29
USP40-206ENST00000443711 DCSTAMPQ9H295 470 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 DNAJB11Q9UBS4 358 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 STEAP1Q9UHE8 339 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 WIPI2Q9Y4P8 454 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 NOTCH2Q04721 2471 aa13.25□□□□□ -0.29
USP40-206ENST00000443711 TRAV38-1A0A0B4J264 116 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 OOEPA6NGQ2 149 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 C3orf80F5H4A9 247 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 H3BMQ9 156 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 AIPO00170 330 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 ZNF205O95201 554 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 HTR3BO95264 441 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 IGHV2-70P01814 119 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 SFTPBP07988 381 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 MUC1P15941 1255 aaPredicted RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 CFPP27918 469 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 MDH2P40926 338 aaKnown RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 BMXP51813 675 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 CAPZA1P52907 286 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 ART1P52961 327 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 CAV3P56539 151 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 BTG1P62324 171 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 P2RY14Q15391 338 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 DGUOKQ16854 277 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 MICBQ29980 383 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 TEX36Q5VZQ5 186 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 SFRP4Q6FHJ7 346 aaPredicted RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 ELP2Q6IA86 826 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 SFXN4Q6P4A7 337 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 FIP1L1Q6UN15 594 aaKnown RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 LRRC28Q86X40 367 aaPredicted RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 FAM58AQ8N1B3 248 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 BATF2Q8N1L9 274 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 C19orf18Q8NEA5 215 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 DEFB108BQ8NET1 73 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 EMG1Q92979 244 aaKnown RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 SLC25A28Q96A46 364 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 C12orf43Q96C57 262 aaKnown RBP13.24□□□□□ -0.29
USP40-206ENST00000443711 WDR13Q9H1Z4 485 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 TMEM165Q9HC07 324 aa13.24□□□□□ -0.29
USP40-206ENST00000443711 HES4Q9HCC6 221 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms