RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 OR2T2Q6IF00 324 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 OR4F17Q8NGA8 305 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 FOXB1Q99853 325 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 ZNF586Q9NXT0 402 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 HMX2A2RU54 273 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 DHRS3O75911 302 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 SP1P08047 785 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 G0S2P27469 103 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 LYG2Q86SG7 212 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 RPP25Q9BUL9 199 aaKnown RBP10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 NKX6-2Q9C056 277 aaPredicted RBP10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 CREBBPQ92793 2442 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 H7BYZ3 331 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 B3GALNT1O75752 331 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 C4orf45Q96LM5 186 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 AUNIPQ9H7T9 357 aa10.77□□□□□ -0.68
CCDC88A-207ENST00000436346 PTPN13Q12923 2485 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 A0A1W2PN81 502 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CD3DP04234 171 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 ATF1P18846 271 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 EPHA8P29322 1005 aaPredicted RBP10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CHRNA7P36544 502 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 OR8B3Q8NGG8 313 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 OTOSQ8NHW6 89 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 UBALD1Q8TB05 177 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 MRGPRX3Q96LB0 322 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 DERL3Q96Q80 235 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 OR8B2Q96RD0 313 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 A0A0B4J2E0 115 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 A0A1B0GX12 115 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 IL9P15248 144 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF17P17021 662 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 C4orf17Q53FE4 359 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 MRGPREQ86SM8 312 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 MCHR2Q969V1 340 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 NEIL1Q96FI4 390 aaPredicted RBP10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CTDSP1Q9GZU7 261 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 H3BP45 60 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2A1Q8NGT9 310 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 GRAMD2BQ96HH9 432 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 RPL34P49207 117 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CDK5R1Q15078 307 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM215Q68D42 235 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF425Q6IV72 752 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 RBPMS2Q6ZRY4 209 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 TMED6Q8WW62 240 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 EXTL1Q92935 676 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 WBP1LQ9NX94 342 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM92Q6UXU6 159 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 MZB1Q8WU39 189 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 RBM14Q96PK6 669 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CABLES2Q9BTV7 478 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 OCIAD1Q9NX40 245 aa10.77□□□□□ -0.69
CCDC88A-207ENST00000436346 CTSVO60911 334 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 OR5R1Q8NH85 324 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LRRC29Q8WV35 223 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 RBPMSQ93062 196 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LSM2Q9Y333 95 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 KPTNQ9Y664 436 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SUMO1P63165 101 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 GLCCI1Q86VQ1 547 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 C20orf196Q8IYI0 205 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC24A4Q8NFF2 622 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 OR5AP2Q8NGF4 316 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A32Q9H2D1 315 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A22Q9H936 323 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 PLEKHA2Q9HB19 425 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV1OR15-9A0A0B4J2B8 117 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 THBS4P35443 961 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 PABPC1L2AQ5JQF8 200 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 OR10Z1Q8NGY1 313 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 DYNLRB2Q8TF09 96 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 CNRIP1Q96F85 164 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 UQCC2Q9BRT2 126 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 KCNE3Q9Y6H6 103 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV1OR21-1A0A087WYE8 117 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SOX15O60248 233 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 PDGFBP01127 241 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 DCTDP32321 178 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 TIPARPQ7Z3E1 657 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 NUFIP2Q7Z417 695 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 WDR61Q9GZS3 305 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 CYR61O00622 381 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 OR4E1P0C645 316 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 BTG1P62324 171 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LHX9Q9NQ69 397 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 DOK5Q9P104 306 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM272A0A1B0GTI8 110 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 FCGR3BO75015 233 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LIMS3P0CW19 117 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LIMS4P0CW20 117 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SCGB1C2P0DMR2 95 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 FUT3P21217 361 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 ENDOGQ14249 297 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 TRAT1Q6PIZ9 186 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 PRSS41Q7RTY9 318 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 HSD17B10Q99714 261 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 TGIF2Q9GZN2 237 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM231Q9H6L2 316 aa10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A19Q9HC21 320 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms