RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TSPAN14Q8NG11 270 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 OR52N4Q8NGI2 321 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 FCGR1BQ92637 280 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 TMEM203Q969S6 136 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 MUL1Q969V5 352 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 BORCS8Q96FH0 119 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 ZNF488Q96MN9 340 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 NR1H4Q96RI1 486 aaPredicted RBP10.37□□□□□ -0.75
USP40-205ENST00000430158 TMED9Q9BVK6 235 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 NARFLQ9H6Q4 476 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 ZNF665Q9H7R5 613 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 NOX4Q9NPH5 578 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 NDUFB11Q9NX14 153 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 ZNF222Q9UK12 451 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 FOXJ3Q9UPW0 622 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 MXRA5Q9NR99 2828 aa10.37□□□□□ -0.75
USP40-205ENST00000430158 IGHV3OR15-7A0A075B7D8 119 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 hCG_1807616A0A1W2PRN6 198 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 IRF2P14316 349 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 MUC1P15941 1255 aaPredicted RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 JUNBP17275 347 aaPredicted RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 ADRA2CP18825 462 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 RAB3AP20336 220 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 CPT2P23786 658 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 GABRA5P31644 462 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 MTCP1P56278 107 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 KISS1Q15726 138 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 STUMQ69YW2 141 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 SFRP4Q6FHJ7 346 aaPredicted RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 ACP7Q6ZNF0 438 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 SLC25A26Q70HW3 274 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 C1QL2Q7Z5L3 287 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 LRRTM1Q86UE6 522 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 MUC20Q8N307 709 aaPredicted RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 BOLLQ8N9W6 283 aaKnown RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 DEFB108BQ8NET1 73 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 ANGPTL6Q8NI99 470 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 ZNF671Q8TAW3 534 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 C12orf43Q96C57 262 aaKnown RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 MSI2Q96DH6 328 aaKnown RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 GSX1Q9H4S2 264 aaPredicted RBP10.36□□□□□ -0.75
USP40-205ENST00000430158 TMEM138Q9NPI0 162 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 RASL12Q9NYN1 266 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 KAAG1Q9UBP8 84 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 CTSZQ9UBR2 303 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 KIAA2026Q5HYC2 2103 aa10.36□□□□□ -0.75
USP40-205ENST00000430158 IGKV1D-17A0A075B6S4 117 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 A0A087WXM4 84 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 TRAV38-1A0A0B4J264 116 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 A0A1B0GW55 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 KIAA1324LA8MWY0 1029 aaPredicted RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 LY6G6DO95868 133 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L2P0CJ85 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L3P0CJ86 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L4P0CJ87 422 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L5P0CJ88 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L6P0CJ89 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L7P0CJ90 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 PSMA1P25786 263 aaKnown RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 ZFP36P26651 326 aaKnown RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 NPBWR2P48146 333 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 SEC61A1P61619 476 aaKnown RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 PAX2Q02962 417 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 TRAM1Q15629 374 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4L9Q6RFH8 374 aaPredicted RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 DCDC5Q6ZRR9 648 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 CEACAM19Q7Z692 300 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 SAXO1Q8IYX7 474 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 SPICQ8N5J4 248 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 Q8NFD4 153 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 PHYHIPQ92561 330 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 RFT1Q96AA3 541 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DACT3Q96B18 629 aaPredicted RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 GFI1Q99684 422 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 NKX3-1Q99801 234 aaPredicted RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 GAL3ST1Q99999 423 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 DUX4Q9UBX2 424 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 POLDIP2Q9Y2S7 368 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 POLR3KQ9Y2Y1 108 aaPredicted RBP10.35□□□□□ -0.75
USP40-205ENST00000430158 JMJD1CQ15652 2540 aa10.35□□□□□ -0.75
USP40-205ENST00000430158 SVEP1Q4LDE5 3571 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 TRDV1A0A1B0GX56 115 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 SHISA3A0PJX4 238 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 ISPDA4D126 451 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 A8MXK9 166 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 CCRL2O00421 344 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 GABRPO00591 440 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 SPRY1O43609 319 aaPredicted RBP10.34□□□□□ -0.75
USP40-205ENST00000430158 CD5LO43866 347 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 RGS9O75916 674 aaPredicted RBP10.34□□□□□ -0.75
USP40-205ENST00000430158 KDM4BO94953 1096 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 GYPAP02724 150 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 TFF1P04155 84 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 PSG2P11465 335 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 GALP22466 123 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 GLRA1P23415 457 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 MAPK3P27361 379 aaPredicted RBP10.34□□□□□ -0.75
USP40-205ENST00000430158 PSMB9P28065 219 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 BDKRB2P30411 391 aa10.34□□□□□ -0.75
USP40-205ENST00000430158 ZNF788Q6ZQV5 615 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms