RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZNF160Q9HCG1 818 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 A0A0J9YW62 118 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 FAM221AA4D161 298 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 MED6O75586 246 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 EIF3GO75821 320 aaKnown RBP eCLIP8.57□□□□□ -1.04
SS18-203ENST00000415083 C1QL1O75973 258 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 MSR1P21757 451 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 RPL12P30050 165 aaKnown RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 SUCLG1P53597 346 aaKnown RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 UCP2P55851 309 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 IAH1Q2TAA2 248 aaPredicted RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 PIGYQ3MUY2 71 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SECTM1Q8WVN6 248 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SAT2Q96F10 170 aaPredicted RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 BIN3Q9NQY0 253 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 HDGFL3Q9Y3E1 203 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SYNGR3O43761 229 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 IFNA2P01563 188 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 FCGR2CP31995 323 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 CD80P33681 288 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 AFF3P51826 1226 aaKnown RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 B3GALT5-AS1P59052 145 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 LYZL2Q7Z4W2 148 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SFT2D1Q8WV19 159 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 HS3ST6Q96QI5 342 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 CLCC1Q96S66 551 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 NAA11Q9BSU3 229 aaPredicted RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 FGF23Q9GZV9 251 aaPredicted RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 RNF122Q9H9V4 155 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 ZNF701Q9NV72 531 aaPredicted RBP8.57□□□□□ -1.04
SS18-203ENST00000415083 ANXA10Q9UJ72 324 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 STARD10Q9Y365 291 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 TIMM10BQ9Y5J6 103 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SMG1Q96Q15 3661 aaKnown RBP8.56□□□□□ -1.04
SS18-203ENST00000415083 ZNF587BE7ETH6 402 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 CSNK1A1P48729 337 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 CLDN15P56746 228 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 TAF9Q16594 264 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 SLC23A3Q6PIS1 610 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 GALNTL5Q7Z4T8 443 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 OR9K2Q8NGE7 335 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 IMMP1LQ96LU5 166 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 IP6K3Q96PC2 410 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 URM1Q9BTM9 101 aaKnown RBP8.56□□□□□ -1.04
SS18-203ENST00000415083 PCED1AQ9H1Q7 454 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 ZFP57Q9NU63 452 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 LINC00587B1AMM8 73 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 K7EPK0 472 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 KLF7O75840 302 aaPredicted RBP8.56□□□□□ -1.04
SS18-203ENST00000415083 CTSDP07339 412 aaPredicted RBP8.56□□□□□ -1.04
SS18-203ENST00000415083 ZNF806P0C7X5 589 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 OR3A2P47893 321 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 TAS2R46P59540 309 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 ASCL4Q6XD76 172 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 PPP1R3BQ86XI6 285 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 FAM71E2Q8N5Q1 922 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 MSI2Q96DH6 328 aaKnown RBP8.56□□□□□ -1.04
SS18-203ENST00000415083 AKR1E2Q96JD6 320 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 C18orf12Q96KH6 178 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 C20orf24Q9BUV8 137 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 HSF4Q9ULV5 492 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 FREM1Q5H8C1 2179 aa8.56□□□□□ -1.04
SS18-203ENST00000415083 DSPP15924 2871 aaKnown RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 LOC102723996A0A087X1L8 192 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 IGHV1-45A0A0A0MS14 117 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 SERPINE3A8MV23 424 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PRSS44E7EML9 344 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 C3orf80F5H4A9 247 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 M0R135 149 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 TNFSF11O14788 317 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 GEMIN2O14893 280 aaKnown RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 CA11O75493 328 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ACAA1P09110 424 aaPredicted RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 OR5AC1P0C628 307 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 DAOP14920 347 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 CHATP28329 748 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ADH6P28332 368 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 EIF3IQ13347 325 aaKnown RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 SURF2Q15527 256 aaPredicted RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 AVPI1Q5T686 147 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 SP5Q6BEB4 398 aaPredicted RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 ZNF774Q6NX45 483 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 Q6ZRG5 221 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 OR10AD1Q8NGE0 317 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 OR5L2Q8NGL0 311 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ZNF799Q96GE5 643 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PRRX2Q99811 253 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PHF7Q9BWX1 381 aaPredicted RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 PARP11Q9NR21 331 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ZNF726A6NNF4 738 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 TOX3O15405 576 aaPredicted RBP8.55□□□□□ -1.04
SS18-203ENST00000415083 DHHO43323 396 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 XRCC2O43543 280 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 CST4P01036 141 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 COX6A1P12074 109 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 LIFP15018 202 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 ZNF44P15621 663 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 SLC35A1P78382 337 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 PEA15Q15121 130 aa8.55□□□□□ -1.04
SS18-203ENST00000415083 CHRFAM7AQ494W8 412 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms